Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 19837 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 19849 | 0.79 | 0.435894 |
Target: 5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3' miRNA: 3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 19913 | 0.76 | 0.573176 |
Target: 5'- -uAACGCUCGUGCcCGAAAaGCGAGGu -3' miRNA: 3'- ucUUGCGGGCAUGaGCUUUgCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 19937 | 0.73 | 0.748034 |
Target: 5'- gAGAACGCUCGUACUgGAAAaacaGUGAc- -3' miRNA: 3'- -UCUUGCGGGCAUGAgCUUUg---CGCUcc -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 19992 | 0.67 | 0.960293 |
Target: 5'- gGGcACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCuUGCGGGCAUGaGCUUUgCGCUCc -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 20200 | 0.67 | 0.956546 |
Target: 5'- -uAACGCUCGUuCcCGAAAaGCGAGGu -3' miRNA: 3'- ucUUGCGGGCAuGaGCUUUgCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 21273 | 0.67 | 0.96381 |
Target: 5'- cAGAugGCCCGUGaugCGca--GCGAGu -3' miRNA: 3'- -UCUugCGGGCAUga-GCuuugCGCUCc -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 23793 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 23860 | 0.93 | 0.067869 |
Target: 5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 23926 | 1.1 | 0.005167 |
Target: 5'- gAGAACGCCCGUACUCGAAACGCGAGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 23990 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 24057 | 0.93 | 0.067869 |
Target: 5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 24123 | 1.11 | 0.004883 |
Target: 5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 24188 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 24255 | 0.92 | 0.075701 |
Target: 5'- gAGAACGCCCGUACUCGAAaaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU---UGCGCU--CC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 24322 | 1.11 | 0.004883 |
Target: 5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 27962 | 0.67 | 0.967104 |
Target: 5'- cGAGCgcgacaagcgGCCCGUGCaugCGGugcAGCGCGGGc -3' miRNA: 3'- uCUUG----------CGGGCAUGa--GCU---UUGCGCUCc -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 31413 | 0.72 | 0.81381 |
Target: 5'- cGAACGCaaGUuuCUCG--GCGCGAGGu -3' miRNA: 3'- uCUUGCGggCAu-GAGCuuUGCGCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 34429 | 0.66 | 0.982532 |
Target: 5'- cGGcgUGCCCGUACUgcuguacaCGGGcacgcugcGCGuCGAGGa -3' miRNA: 3'- -UCuuGCGGGCAUGA--------GCUU--------UGC-GCUCC- -5' |
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21286 | 5' | -52.5 | NC_004778.3 | + | 36242 | 0.66 | 0.978167 |
Target: 5'- uGAACGCUCG-GCUCuu-GCGCGAu- -3' miRNA: 3'- uCUUGCGGGCaUGAGcuuUGCGCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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