miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21286 5' -52.5 NC_004778.3 + 23793 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 99719 0.69 0.899341
Target:  5'- gAGAACGUCUGUACcCGAAAaaCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5'
21286 5' -52.5 NC_004778.3 + 42669 0.69 0.899341
Target:  5'- uGAGCaGCCCGUugUCGGGcACGcCGAc- -3'
miRNA:   3'- uCUUG-CGGGCAugAGCUU-UGC-GCUcc -5'
21286 5' -52.5 NC_004778.3 + 122409 0.69 0.899341
Target:  5'- -cAACaaUCGUACUCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGcgGGCAUGAGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 66778 0.69 0.899341
Target:  5'- gAGAACGUCUGUACgCGAAAaaCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5'
21286 5' -52.5 NC_004778.3 + 105673 0.7 0.89267
Target:  5'- cGAACGUgagcuuuuuaCUGUACUCGGAauGCGCGAc- -3'
miRNA:   3'- uCUUGCG----------GGCAUGAGCUU--UGCGCUcc -5'
21286 5' -52.5 NC_004778.3 + 122661 0.7 0.878622
Target:  5'- gAGAACaCCCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAuGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 116008 0.7 0.878622
Target:  5'- gGGggUGCCUG-GCUUGAuguacauGCGCGAGu -3'
miRNA:   3'- -UCuuGCGGGCaUGAGCUu------UGCGCUCc -5'
21286 5' -52.5 NC_004778.3 + 124492 0.7 0.871253
Target:  5'- aAGGcccGCGCCCGUGCgUCGAGucACGU-AGGc -3'
miRNA:   3'- -UCU---UGCGGGCAUG-AGCUU--UGCGcUCC- -5'
21286 5' -52.5 NC_004778.3 + 95908 0.71 0.855855
Target:  5'- cGGAuaGCGCCCGgcgcgGCUCcaaaucuuGAugGCGGGGc -3'
miRNA:   3'- -UCU--UGCGGGCa----UGAGc-------UUugCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 45134 0.71 0.847837
Target:  5'- gAGAGCGaCCCGgcCgcgCGAAAUGCGcuGGa -3'
miRNA:   3'- -UCUUGC-GGGCauGa--GCUUUGCGCu-CC- -5'
21286 5' -52.5 NC_004778.3 + 66841 0.71 0.839616
Target:  5'- aAGAACGUauGUACcCGAAAaGCGAGGc -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 122249 0.71 0.831199
Target:  5'- -cAACGCUCGcACUUGAAAaGCGGGGu -3'
miRNA:   3'- ucUUGCGGGCaUGAGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 31413 0.72 0.81381
Target:  5'- cGAACGCaaGUuuCUCG--GCGCGAGGu -3'
miRNA:   3'- uCUUGCGggCAu-GAGCuuUGCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 99301 0.72 0.795737
Target:  5'- gAGAACGCUCGUGCcCuAAAaGCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGcUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 94875 0.72 0.77705
Target:  5'- -aGACGCCCGUGCUgGGAuUGC-AGGa -3'
miRNA:   3'- ucUUGCGGGCAUGAgCUUuGCGcUCC- -5'
21286 5' -52.5 NC_004778.3 + 122880 0.72 0.7675
Target:  5'- gAGAACaUCUGUACUUGGAAaGCGGGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGAGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 99983 0.73 0.757825
Target:  5'- gAGAACGUuuGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5'
21286 5' -52.5 NC_004778.3 + 19937 0.73 0.748034
Target:  5'- gAGAACGCUCGUACUgGAAAaacaGUGAc- -3'
miRNA:   3'- -UCUUGCGGGCAUGAgCUUUg---CGCUcc -5'
21286 5' -52.5 NC_004778.3 + 124977 0.73 0.738138
Target:  5'- cGGAACGUCUGUACUUaAAA-GCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.