miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21287 3' -48.8 NC_004778.3 + 7565 0.66 0.997249
Target:  5'- uGCUGGCGUugcagaacACGUCUCGAuccacgucgGGCc-- -3'
miRNA:   3'- -CGACUGCG--------UGCAGAGUUuaa------CCGuaa -5'
21287 3' -48.8 NC_004778.3 + 8730 0.71 0.9211
Target:  5'- -aUGGCGCACGUUggcguugUCAAAUUGGUc-- -3'
miRNA:   3'- cgACUGCGUGCAG-------AGUUUAACCGuaa -5'
21287 3' -48.8 NC_004778.3 + 18850 0.72 0.915583
Target:  5'- cGCUGACGUACGaCg-GAGUUGGCu-- -3'
miRNA:   3'- -CGACUGCGUGCaGagUUUAACCGuaa -5'
21287 3' -48.8 NC_004778.3 + 19884 0.72 0.892738
Target:  5'- cGCUGACGCACGUCUaaagauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21287 3' -48.8 NC_004778.3 + 19949 0.67 0.990331
Target:  5'- cGCUGACGCACGUUaaAGAUa-GCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGagUUUAacCGUaa -5'
21287 3' -48.8 NC_004778.3 + 20105 0.66 0.996123
Target:  5'- cGCUGACGCACGUCaCuuGUUuuuccaguacGaGCGUUc -3'
miRNA:   3'- -CGACUGCGUGCAGaGuuUAA----------C-CGUAA- -5'
21287 3' -48.8 NC_004778.3 + 20171 0.67 0.994645
Target:  5'- cGCcGACGCACGUC-CAAAgauaGCAc- -3'
miRNA:   3'- -CGaCUGCGUGCAGaGUUUaac-CGUaa -5'
21287 3' -48.8 NC_004778.3 + 22781 0.68 0.987168
Target:  5'- -aUGGCGCGCGUaccaaCUCGGcgaacccAUUGGCAa- -3'
miRNA:   3'- cgACUGCGUGCA-----GAGUU-------UAACCGUaa -5'
21287 3' -48.8 NC_004778.3 + 23825 0.84 0.319863
Target:  5'- cGCUGACGCAUGUCUCAAAUUaGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAGUUUAAcCGUaa -5'
21287 3' -48.8 NC_004778.3 + 23891 1.08 0.011841
Target:  5'- cGCUGACGCACGUCUCAAAUUGGCAUUc -3'
miRNA:   3'- -CGACUGCGUGCAGAGUUUAACCGUAA- -5'
21287 3' -48.8 NC_004778.3 + 23956 0.69 0.978271
Target:  5'- cGCUGACGCAUGUCUaaaaauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21287 3' -48.8 NC_004778.3 + 24022 0.84 0.319863
Target:  5'- cGCUGACGCAUGUCUCAAAUUaGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAGUUUAAcCGUaa -5'
21287 3' -48.8 NC_004778.3 + 24088 1.08 0.011841
Target:  5'- cGCUGACGCACGUCUCAAAUUGGCAUUc -3'
miRNA:   3'- -CGACUGCGUGCAGAGUUUAACCGUAA- -5'
21287 3' -48.8 NC_004778.3 + 24154 0.69 0.978271
Target:  5'- cGCUGACGCAUGUCUaaaaauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21287 3' -48.8 NC_004778.3 + 24220 0.84 0.319863
Target:  5'- cGCUGACGCAUGUCUCAAAUUaGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAGUUUAAcCGUaa -5'
21287 3' -48.8 NC_004778.3 + 24287 1.08 0.011841
Target:  5'- cGCUGACGCACGUCUCAAAUUGGCAUUc -3'
miRNA:   3'- -CGACUGCGUGCAGAGUUUAACCGUAA- -5'
21287 3' -48.8 NC_004778.3 + 33771 0.67 0.993751
Target:  5'- aCUGGCGCAgGUCgag---UGGCAg- -3'
miRNA:   3'- cGACUGCGUgCAGaguuuaACCGUaa -5'
21287 3' -48.8 NC_004778.3 + 51192 0.69 0.976736
Target:  5'- -aUGGCGCccaaACGUaUCGAGUUGGCGg- -3'
miRNA:   3'- cgACUGCG----UGCAgAGUUUAACCGUaa -5'
21287 3' -48.8 NC_004778.3 + 66693 0.72 0.892738
Target:  5'- cGCUGACGCACGUCUaaagauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21287 3' -48.8 NC_004778.3 + 66758 0.72 0.892738
Target:  5'- cGCUGACGCACGUCUaaagauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.