Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21287 | 5' | -52.5 | NC_004778.3 | + | 111766 | 0.68 | 0.948348 |
Target: 5'- -aAACGCCCauugcGUACUCGgcGCGCGu-- -3' miRNA: 3'- ucUUGCGGG-----CAUGAGCuuUGCGCucc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 23990 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 24188 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 107667 | 0.68 | 0.934235 |
Target: 5'- -cGACGCCCGUgucGCgcgaCGAAaccuuGCGCGuGGa -3' miRNA: 3'- ucUUGCGGGCA---UGa---GCUU-----UGCGCuCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 23793 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 70379 | 0.67 | 0.956546 |
Target: 5'- -uGACGCCCGUGCUguccGGCGCuuGGg -3' miRNA: 3'- ucUUGCGGGCAUGAgcu-UUGCGcuCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 20200 | 0.67 | 0.956546 |
Target: 5'- -uAACGCUCGUuCcCGAAAaGCGAGGu -3' miRNA: 3'- ucUUGCGGGCAuGaGCUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 27962 | 0.67 | 0.967104 |
Target: 5'- cGAGCgcgacaagcgGCCCGUGCaugCGGugcAGCGCGGGc -3' miRNA: 3'- uCUUG----------CGGGCAUGa--GCU---UUGCGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 61950 | 0.67 | 0.956546 |
Target: 5'- aAGaAACGCCgCGUuCUCGAAcAUGuCGGGGc -3' miRNA: 3'- -UC-UUGCGG-GCAuGAGCUU-UGC-GCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 19992 | 0.67 | 0.960293 |
Target: 5'- gGGcACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCuUGCGGGCAUGaGCUUUgCGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 21273 | 0.67 | 0.96381 |
Target: 5'- cAGAugGCCCGUGaugCGca--GCGAGu -3' miRNA: 3'- -UCUugCGGGCAUga-GCuuugCGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 58271 | 0.66 | 0.982532 |
Target: 5'- cGGcGCGUuuaacUCGUgggGCUCGAGGCGCGGcGGc -3' miRNA: 3'- -UCuUGCG-----GGCA---UGAGCUUUGCGCU-CC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 36242 | 0.66 | 0.978167 |
Target: 5'- uGAACGCUCG-GCUCuu-GCGCGAu- -3' miRNA: 3'- uCUUGCGGGCaUGAGcuuUGCGCUcc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 99410 | 0.66 | 0.973044 |
Target: 5'- ---uCGUC-GUACUCGGAAaGCGAGGu -3' miRNA: 3'- ucuuGCGGgCAUGAGCUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 74833 | 0.66 | 0.975704 |
Target: 5'- --uGCGCCCGUAgUCGGuGGCGcCGAu- -3' miRNA: 3'- ucuUGCGGGCAUgAGCU-UUGC-GCUcc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 51358 | 0.66 | 0.978167 |
Target: 5'- aAGGACuuGCCCGccaACUCGAuACGUuuGGg -3' miRNA: 3'- -UCUUG--CGGGCa--UGAGCUuUGCGcuCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 34429 | 0.66 | 0.982532 |
Target: 5'- cGGcgUGCCCGUACUgcuguacaCGGGcacgcugcGCGuCGAGGa -3' miRNA: 3'- -UCuuGCGGGCAUGA--------GCUU--------UGC-GCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 98847 | 0.66 | 0.98332 |
Target: 5'- cGGAGCGCggcaCGUGCUCGuugaagaacuguuGCGCGGc- -3' miRNA: 3'- -UCUUGCGg---GCAUGAGCuu-----------UGCGCUcc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 36756 | 0.66 | 0.973044 |
Target: 5'- cAGAaugACGCCCG-ACUCGAAcgGCaccguGUGAGa -3' miRNA: 3'- -UCU---UGCGGGCaUGAGCUU--UG-----CGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 99785 | 0.66 | 0.98044 |
Target: 5'- gAGAACGUauGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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