Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21287 | 5' | -52.5 | NC_004778.3 | + | 24057 | 0.93 | 0.067869 |
Target: 5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 23860 | 0.93 | 0.067869 |
Target: 5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 23926 | 1.1 | 0.005167 |
Target: 5'- gAGAACGCCCGUACUCGAAACGCGAGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 24322 | 1.11 | 0.004883 |
Target: 5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 99301 | 0.72 | 0.795737 |
Target: 5'- gAGAACGCUCGUGCcCuAAAaGCGGGGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGcUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 66841 | 0.71 | 0.839616 |
Target: 5'- aAGAACGUauGUACcCGAAAaGCGAGGc -3' miRNA: 3'- -UCUUGCGggCAUGaGCUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 45134 | 0.71 | 0.847837 |
Target: 5'- gAGAGCGaCCCGgcCgcgCGAAAUGCGcuGGa -3' miRNA: 3'- -UCUUGC-GGGCauGa--GCUUUGCGCu-CC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 34429 | 0.66 | 0.982532 |
Target: 5'- cGGcgUGCCCGUACUgcuguacaCGGGcacgcugcGCGuCGAGGa -3' miRNA: 3'- -UCuuGCGGGCAUGA--------GCUU--------UGC-GCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 122819 | 0.66 | 0.98044 |
Target: 5'- cGAACaUCUGUACUUGGAAaGCGGGa -3' miRNA: 3'- uCUUGcGGGCAUGAGCUUUgCGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 74833 | 0.66 | 0.975704 |
Target: 5'- --uGCGCCCGUAgUCGGuGGCGcCGAu- -3' miRNA: 3'- ucuUGCGGGCAUgAGCU-UUGC-GCUcc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 99410 | 0.66 | 0.973044 |
Target: 5'- ---uCGUC-GUACUCGGAAaGCGAGGu -3' miRNA: 3'- ucuuGCGGgCAUGAGCUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 21273 | 0.67 | 0.96381 |
Target: 5'- cAGAugGCCCGUGaugCGca--GCGAGu -3' miRNA: 3'- -UCUugCGGGCAUga-GCuuugCGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 61950 | 0.67 | 0.956546 |
Target: 5'- aAGaAACGCCgCGUuCUCGAAcAUGuCGGGGc -3' miRNA: 3'- -UC-UUGCGG-GCAuGAGCUU-UGC-GCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 19992 | 0.67 | 0.960293 |
Target: 5'- gGGcACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCuUGCGGGCAUGaGCUUUgCGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 107667 | 0.68 | 0.934235 |
Target: 5'- -cGACGCCCGUgucGCgcgaCGAAaccuuGCGCGuGGa -3' miRNA: 3'- ucUUGCGGGCA---UGa---GCUU-----UGCGCuCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 24188 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 23990 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 23793 | 0.68 | 0.934235 |
Target: 5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3' miRNA: 3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 66778 | 0.69 | 0.899341 |
Target: 5'- gAGAACGUCUGUACgCGAAAaaCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5' |
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21287 | 5' | -52.5 | NC_004778.3 | + | 124492 | 0.7 | 0.871253 |
Target: 5'- aAGGcccGCGCCCGUGCgUCGAGucACGU-AGGc -3' miRNA: 3'- -UCU---UGCGGGCAUG-AGCUU--UGCGcUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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