miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21287 5' -52.5 NC_004778.3 + 19837 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 19849 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 19913 0.76 0.573176
Target:  5'- -uAACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAUGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 19937 0.73 0.748034
Target:  5'- gAGAACGCUCGUACUgGAAAaacaGUGAc- -3'
miRNA:   3'- -UCUUGCGGGCAUGAgCUUUg---CGCUcc -5'
21287 5' -52.5 NC_004778.3 + 19992 0.67 0.960293
Target:  5'- gGGcACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCuUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 20200 0.67 0.956546
Target:  5'- -uAACGCUCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAuGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 21273 0.67 0.96381
Target:  5'- cAGAugGCCCGUGaugCGca--GCGAGu -3'
miRNA:   3'- -UCUugCGGGCAUga-GCuuugCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 23793 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 23860 0.93 0.067869
Target:  5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5'
21287 5' -52.5 NC_004778.3 + 23926 1.1 0.005167
Target:  5'- gAGAACGCCCGUACUCGAAACGCGAGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 23990 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 24057 0.93 0.067869
Target:  5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5'
21287 5' -52.5 NC_004778.3 + 24123 1.11 0.004883
Target:  5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 24188 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 24255 0.92 0.075701
Target:  5'- gAGAACGCCCGUACUCGAAaaaGCGCGGucGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUU---UGCGCU--CC- -5'
21287 5' -52.5 NC_004778.3 + 24322 1.11 0.004883
Target:  5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 27962 0.67 0.967104
Target:  5'- cGAGCgcgacaagcgGCCCGUGCaugCGGugcAGCGCGGGc -3'
miRNA:   3'- uCUUG----------CGGGCAUGa--GCU---UUGCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 31413 0.72 0.81381
Target:  5'- cGAACGCaaGUuuCUCG--GCGCGAGGu -3'
miRNA:   3'- uCUUGCGggCAu-GAGCuuUGCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 34429 0.66 0.982532
Target:  5'- cGGcgUGCCCGUACUgcuguacaCGGGcacgcugcGCGuCGAGGa -3'
miRNA:   3'- -UCuuGCGGGCAUGA--------GCUU--------UGC-GCUCC- -5'
21287 5' -52.5 NC_004778.3 + 36242 0.66 0.978167
Target:  5'- uGAACGCUCG-GCUCuu-GCGCGAu- -3'
miRNA:   3'- uCUUGCGGGCaUGAGcuuUGCGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.