miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21291 5' -54.6 NC_004778.3 + 29326 0.66 0.912072
Target:  5'- uCGaAGGugGCGCgGCgcgcGCUGGggUg -3'
miRNA:   3'- -GC-UCCugCGCGaCGacu-UGACCuuGu -5'
21291 5' -54.6 NC_004778.3 + 117672 0.66 0.912072
Target:  5'- aCGAuGGCGUGCUGCUGuGCgccgUGGAcCGg -3'
miRNA:   3'- -GCUcCUGCGCGACGACuUG----ACCUuGU- -5'
21291 5' -54.6 NC_004778.3 + 41835 0.66 0.905863
Target:  5'- --cGGAgGCGUUGgaGAACUGGcucGCGg -3'
miRNA:   3'- gcuCCUgCGCGACgaCUUGACCu--UGU- -5'
21291 5' -54.6 NC_004778.3 + 70692 0.67 0.878603
Target:  5'- aGuGGAUGC-CgaccGUUGAACUGGAAUAu -3'
miRNA:   3'- gCuCCUGCGcGa---CGACUUGACCUUGU- -5'
21291 5' -54.6 NC_004778.3 + 107894 0.67 0.876407
Target:  5'- aCGuGGGCuGCGCcguugcggaaacggUGCUGGACUGcGGCAu -3'
miRNA:   3'- -GCuCCUG-CGCG--------------ACGACUUGACcUUGU- -5'
21291 5' -54.6 NC_004778.3 + 7204 0.67 0.871202
Target:  5'- gGAGGACGUGUUGCUG-GCUaucaaAACAg -3'
miRNA:   3'- gCUCCUGCGCGACGACuUGAcc---UUGU- -5'
21291 5' -54.6 NC_004778.3 + 110449 0.67 0.862801
Target:  5'- aGuuGAUGCGUUGCaagcgcagcugacUGAACUGGAcgGCAa -3'
miRNA:   3'- gCucCUGCGCGACG-------------ACUUGACCU--UGU- -5'
21291 5' -54.6 NC_004778.3 + 45758 0.67 0.862801
Target:  5'- aCGAGGGCGCGgcuaUGCaGAaggcgcgccaggcGCUGGAGgAg -3'
miRNA:   3'- -GCUCCUGCGCg---ACGaCU-------------UGACCUUgU- -5'
21291 5' -54.6 NC_004778.3 + 35659 0.68 0.830957
Target:  5'- ------aGCGCUGCUGAACUGGucGCu -3'
miRNA:   3'- gcuccugCGCGACGACUUGACCu-UGu -5'
21291 5' -54.6 NC_004778.3 + 35607 0.7 0.757212
Target:  5'- uCGAcGGugGCGUUGCUuguGCUGGcaAACAa -3'
miRNA:   3'- -GCU-CCugCGCGACGAcu-UGACC--UUGU- -5'
21291 5' -54.6 NC_004778.3 + 123439 0.73 0.540946
Target:  5'- uCGAGGAUGaGCUgGCgccaGAGCUGGAACu -3'
miRNA:   3'- -GCUCCUGCgCGA-CGa---CUUGACCUUGu -5'
21291 5' -54.6 NC_004778.3 + 104110 0.75 0.443285
Target:  5'- aGAGGAC---CUGCUGAugUGGAGCAu -3'
miRNA:   3'- gCUCCUGcgcGACGACUugACCUUGU- -5'
21291 5' -54.6 NC_004778.3 + 28041 1.09 0.003288
Target:  5'- gCGAGGACGCGCUGCUGAACUGGAACAu -3'
miRNA:   3'- -GCUCCUGCGCGACGACUUGACCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.