Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21293 | 5' | -53.4 | NC_004778.3 | + | 29260 | 1.08 | 0.004396 |
Target: 5'- gUGUGAAACAUGCCUGCCUCCGCGAUGc -3' miRNA: 3'- -ACACUUUGUACGGACGGAGGCGCUAC- -5' |
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21293 | 5' | -53.4 | NC_004778.3 | + | 126380 | 0.68 | 0.859309 |
Target: 5'- gGUGccGCAUGUgUGCCUugCCGCGuUGa -3' miRNA: 3'- aCACuuUGUACGgACGGA--GGCGCuAC- -5' |
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21293 | 5' | -53.4 | NC_004778.3 | + | 126214 | 0.66 | 0.937604 |
Target: 5'- cGUGGAACGUuugaaauccgaGCUgGCCUCaaaaucaGCGGUGa -3' miRNA: 3'- aCACUUUGUA-----------CGGaCGGAGg------CGCUAC- -5' |
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21293 | 5' | -53.4 | NC_004778.3 | + | 96587 | 0.66 | 0.942479 |
Target: 5'- cGUGGAGCAcccUGCUaGCCagCGCGGc- -3' miRNA: 3'- aCACUUUGU---ACGGaCGGagGCGCUac -5' |
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21293 | 5' | -53.4 | NC_004778.3 | + | 121564 | 0.66 | 0.9471 |
Target: 5'- --cGAcGCGUGCCUGCUgcucagCCGCa--- -3' miRNA: 3'- acaCUuUGUACGGACGGa-----GGCGcuac -5' |
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21293 | 5' | -53.4 | NC_004778.3 | + | 123824 | 0.66 | 0.937604 |
Target: 5'- uUGUGGAACuuuUGCCgacgaggGCUgUUCGCGAUa -3' miRNA: 3'- -ACACUUUGu--ACGGa------CGG-AGGCGCUAc -5' |
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21293 | 5' | -53.4 | NC_004778.3 | + | 6283 | 0.73 | 0.645983 |
Target: 5'- cGUGAGua--GCCUGCCUCUGCauaaGAUGg -3' miRNA: 3'- aCACUUuguaCGGACGGAGGCG----CUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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