miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21295 3' -52.5 NC_004778.3 + 99876 0.66 0.969907
Target:  5'- uGCGC-CAGCgucGACCcUGCCU--UUUGa -3'
miRNA:   3'- gCGCGcGUCG---CUGGaACGGAuaAAAC- -5'
21295 3' -52.5 NC_004778.3 + 30300 0.66 0.969907
Target:  5'- gGCGCGUuuGGCGGCCaUGgCU--UUUGu -3'
miRNA:   3'- gCGCGCG--UCGCUGGaACgGAuaAAAC- -5'
21295 3' -52.5 NC_004778.3 + 71212 0.66 0.966734
Target:  5'- cCGCuGUGCAGCGGCUggacgcgGCCUc----- -3'
miRNA:   3'- -GCG-CGCGUCGCUGGaa-----CGGAuaaaac -5'
21295 3' -52.5 NC_004778.3 + 69778 0.66 0.966734
Target:  5'- gGCGCGagaaccgagaGGCGGCCgUGCCUc----- -3'
miRNA:   3'- gCGCGCg---------UCGCUGGaACGGAuaaaac -5'
21295 3' -52.5 NC_004778.3 + 25337 0.66 0.966734
Target:  5'- uGCGUaggaGCGGCGcaACCUUGUCUGc---- -3'
miRNA:   3'- gCGCG----CGUCGC--UGGAACGGAUaaaac -5'
21295 3' -52.5 NC_004778.3 + 33075 0.66 0.963332
Target:  5'- gGCGCaacgguGCAGCGGCCcgcUGCCg------ -3'
miRNA:   3'- gCGCG------CGUCGCUGGa--ACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 34934 0.66 0.955815
Target:  5'- uGUGCGCGGCGGCgUcguuauugUGCCa------ -3'
miRNA:   3'- gCGCGCGUCGCUGgA--------ACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 38358 0.66 0.955815
Target:  5'- gCGCGCGCuAGCGcGCaUUGCCaGUUUc- -3'
miRNA:   3'- -GCGCGCG-UCGC-UGgAACGGaUAAAac -5'
21295 3' -52.5 NC_004778.3 + 84938 0.67 0.95169
Target:  5'- aCGCggugGCGCAacacGCGAUCUUGCCg------ -3'
miRNA:   3'- -GCG----CGCGU----CGCUGGAACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 93144 0.67 0.95169
Target:  5'- aCGCGgccgGCGGCGACUUUGUCg---UUGc -3'
miRNA:   3'- -GCGCg---CGUCGCUGGAACGGauaaAAC- -5'
21295 3' -52.5 NC_004778.3 + 49340 0.67 0.947315
Target:  5'- aCGUGUGCGGC-ACCacGUCUcgUUUGa -3'
miRNA:   3'- -GCGCGCGUCGcUGGaaCGGAuaAAAC- -5'
21295 3' -52.5 NC_004778.3 + 17246 0.67 0.947315
Target:  5'- cCGCGCGCAcagcaacaCGGCCUUGUCg------ -3'
miRNA:   3'- -GCGCGCGUc-------GCUGGAACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 38365 0.67 0.941247
Target:  5'- cCGUGCGCAGCGACgaguacgcgaaagugUGCCg------ -3'
miRNA:   3'- -GCGCGCGUCGCUGga-------------ACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 2392 0.67 0.932655
Target:  5'- -cCGCGCGGUGGCCgacgUGCCc------ -3'
miRNA:   3'- gcGCGCGUCGCUGGa---ACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 76425 0.67 0.932655
Target:  5'- gGCGCGCGGCGuuucuACCUUuaacaGCCUu----- -3'
miRNA:   3'- gCGCGCGUCGC-----UGGAA-----CGGAuaaaac -5'
21295 3' -52.5 NC_004778.3 + 51143 0.68 0.92725
Target:  5'- gGCGCGCGGCugaagcACUUUGCCg------ -3'
miRNA:   3'- gCGCGCGUCGc-----UGGAACGGauaaaac -5'
21295 3' -52.5 NC_004778.3 + 5603 0.68 0.921586
Target:  5'- gGCGCGCAGUuGCCUU---UGUUUUGg -3'
miRNA:   3'- gCGCGCGUCGcUGGAAcggAUAAAAC- -5'
21295 3' -52.5 NC_004778.3 + 20537 0.68 0.921586
Target:  5'- uGCGCaGCAagauGCGGCCUUGgCUAa---- -3'
miRNA:   3'- gCGCG-CGU----CGCUGGAACgGAUaaaac -5'
21295 3' -52.5 NC_004778.3 + 50371 0.68 0.914445
Target:  5'- gGCGCGUGGUGACCgucgcgcgccacUGCCgcgagAUUUUa -3'
miRNA:   3'- gCGCGCGUCGCUGGa-----------ACGGa----UAAAAc -5'
21295 3' -52.5 NC_004778.3 + 122143 0.68 0.909477
Target:  5'- aCGUGCGuCAGCgccGACCUUGCUUu----- -3'
miRNA:   3'- -GCGCGC-GUCG---CUGGAACGGAuaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.