miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21295 5' -57.3 NC_004778.3 + 61038 0.66 0.806419
Target:  5'- gGCGGucGGUaGCCAAAucaaacacGUGCUcgaaucgcGGCGCCg -3'
miRNA:   3'- aUGCU--CCGaCGGUUU--------CACGA--------CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 100668 0.66 0.806419
Target:  5'- gGCGucGCgcuccccguUGCCaAGAGUcggGUUGGCGCCu -3'
miRNA:   3'- aUGCucCG---------ACGG-UUUCA---CGACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 24133 0.66 0.803711
Target:  5'- gUACGAGcGUUGCCGuaaaacGAGUGCUauuuuuagacaugcGucaGCGCCg -3'
miRNA:   3'- -AUGCUC-CGACGGU------UUCACGA--------------C---CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 24331 0.66 0.803711
Target:  5'- gUACGAGcGUUGCCGuaaaacGAGUGCUauuuuuagacaugcGucaGCGCCg -3'
miRNA:   3'- -AUGCUC-CGACGGU------UUCACGA--------------C---CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 15462 0.66 0.797336
Target:  5'- cGCGAccacGCCAAAGUGCUGccGCGCa -3'
miRNA:   3'- aUGCUccgaCGGUUUCACGAC--CGCGg -5'
21295 5' -57.3 NC_004778.3 + 34297 0.66 0.778713
Target:  5'- cUACGAGaGCaGCa--AGUGCcGGCGCg -3'
miRNA:   3'- -AUGCUC-CGaCGguuUCACGaCCGCGg -5'
21295 5' -57.3 NC_004778.3 + 76635 0.67 0.759545
Target:  5'- aGCG-GGCgGCCGGAacgGCcgcucgguaauUGGCGCCg -3'
miRNA:   3'- aUGCuCCGaCGGUUUca-CG-----------ACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 74239 0.67 0.759545
Target:  5'- cGCuGAGGCgcaUCAAAuuGUGCUGGUGCa -3'
miRNA:   3'- aUG-CUCCGac-GGUUU--CACGACCGCGg -5'
21295 5' -57.3 NC_004778.3 + 71211 0.67 0.759545
Target:  5'- gGCGAGGgUgucGCCGAGGgcguagGCgagGGUGUCg -3'
miRNA:   3'- aUGCUCCgA---CGGUUUCa-----CGa--CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 9193 0.67 0.759545
Target:  5'- aGCGcGGCgGUUAAcuuGUGCgacGGCGCCu -3'
miRNA:   3'- aUGCuCCGaCGGUUu--CACGa--CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 9489 0.67 0.759545
Target:  5'- gGCGAGGUgauUGCCGAcGcGgaGGCGUa -3'
miRNA:   3'- aUGCUCCG---ACGGUUuCaCgaCCGCGg -5'
21295 5' -57.3 NC_004778.3 + 106453 0.67 0.749782
Target:  5'- gGCuGGGGCUGCgGcGG-GCacgGGCGCUg -3'
miRNA:   3'- aUG-CUCCGACGgUuUCaCGa--CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 94826 0.67 0.749782
Target:  5'- gUACGAGGaCUGCaac-GUGCcgguggguUGcGCGCCg -3'
miRNA:   3'- -AUGCUCC-GACGguuuCACG--------AC-CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 8803 0.67 0.739911
Target:  5'- gGCGAGGCgGCgGgcGcGCucagcgaaUGGCGCCu -3'
miRNA:   3'- aUGCUCCGaCGgUuuCaCG--------ACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 128765 0.67 0.733941
Target:  5'- gGCgGAGGCggagGCgGAGGUaugcccgccgacaaaGUUGGCGCUg -3'
miRNA:   3'- aUG-CUCCGa---CGgUUUCA---------------CGACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 128684 0.67 0.733941
Target:  5'- gGCgGAGGCggagGCgGAGGUaugcccgccgacaaaGUUGGCGCUg -3'
miRNA:   3'- aUG-CUCCGa---CGgUUUCA---------------CGACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 51305 0.67 0.709753
Target:  5'- uUACGaAGGC-GgCAAAGUGCUucagccGcGCGCCg -3'
miRNA:   3'- -AUGC-UCCGaCgGUUUCACGA------C-CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 66861 0.67 0.709753
Target:  5'- aGCGAGGCUaUCuuuAG-GCgucGGCGCCg -3'
miRNA:   3'- aUGCUCCGAcGGuu-UCaCGa--CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 15717 0.68 0.69955
Target:  5'- cGCGAGauGC-GCCAauugauaaAAGUGUUGGcCGCCc -3'
miRNA:   3'- aUGCUC--CGaCGGU--------UUCACGACC-GCGG- -5'
21295 5' -57.3 NC_004778.3 + 6415 0.68 0.69955
Target:  5'- gUACGAGGUcguUGCCAAuuUGCccGCGCUg -3'
miRNA:   3'- -AUGCUCCG---ACGGUUucACGacCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.