miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21295 5' -57.3 NC_004778.3 + 4163 0.68 0.647846
Target:  5'- uUGCGAGGacgcGCCGAcGUGCgUGGC-CCu -3'
miRNA:   3'- -AUGCUCCga--CGGUUuCACG-ACCGcGG- -5'
21295 5' -57.3 NC_004778.3 + 6415 0.68 0.69955
Target:  5'- gUACGAGGUcguUGCCAAuuUGCccGCGCUg -3'
miRNA:   3'- -AUGCUCCG---ACGGUUucACGacCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 8803 0.67 0.739911
Target:  5'- gGCGAGGCgGCgGgcGcGCucagcgaaUGGCGCCu -3'
miRNA:   3'- aUGCUCCGaCGgUuuCaCG--------ACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 9015 0.7 0.564853
Target:  5'- gGCG-GGCUGCauuuGUcGCaGGCGCCg -3'
miRNA:   3'- aUGCuCCGACGguuuCA-CGaCCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 9193 0.67 0.759545
Target:  5'- aGCGcGGCgGUUAAcuuGUGCgacGGCGCCu -3'
miRNA:   3'- aUGCuCCGaCGGUUu--CACGa--CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 9489 0.67 0.759545
Target:  5'- gGCGAGGUgauUGCCGAcGcGgaGGCGUa -3'
miRNA:   3'- aUGCUCCG---ACGGUUuCaCgaCCGCGg -5'
21295 5' -57.3 NC_004778.3 + 9881 0.68 0.668629
Target:  5'- uUACGc-GCcGCCAAAGUGCcgcccgGGCGCg -3'
miRNA:   3'- -AUGCucCGaCGGUUUCACGa-----CCGCGg -5'
21295 5' -57.3 NC_004778.3 + 10748 0.72 0.44695
Target:  5'- cGCG-GGCUGCCGu-GUGC--GCGCCg -3'
miRNA:   3'- aUGCuCCGACGGUuuCACGacCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 14375 0.76 0.272127
Target:  5'- gGCcGGGCaggauucgGUCAAAGUGCUGGCGUCc -3'
miRNA:   3'- aUGcUCCGa-------CGGUUUCACGACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 15462 0.66 0.797336
Target:  5'- cGCGAccacGCCAAAGUGCUGccGCGCa -3'
miRNA:   3'- aUGCUccgaCGGUUUCACGAC--CGCGg -5'
21295 5' -57.3 NC_004778.3 + 15586 0.71 0.50442
Target:  5'- gGCGGcGCUGCgAGcAGUGCUuugauaucggcGGCGCCa -3'
miRNA:   3'- aUGCUcCGACGgUU-UCACGA-----------CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 15717 0.68 0.69955
Target:  5'- cGCGAGauGC-GCCAauugauaaAAGUGUUGGcCGCCc -3'
miRNA:   3'- aUGCUC--CGaCGGU--------UUCACGACC-GCGG- -5'
21295 5' -57.3 NC_004778.3 + 19877 0.68 0.675878
Target:  5'- gUGCGucGGC-GCCGAccucgcAGUGCUaucuuacgugcgucGGCGCCg -3'
miRNA:   3'- -AUGCu-CCGaCGGUU------UCACGA--------------CCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 23935 0.71 0.524288
Target:  5'- gUACGAGcGUUGCCGuaaaaCUGGUGCCa -3'
miRNA:   3'- -AUGCUC-CGACGGUuucacGACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 24133 0.66 0.803711
Target:  5'- gUACGAGcGUUGCCGuaaaacGAGUGCUauuuuuagacaugcGucaGCGCCg -3'
miRNA:   3'- -AUGCUC-CGACGGU------UUCACGA--------------C---CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 24331 0.66 0.803711
Target:  5'- gUACGAGcGUUGCCGuaaaacGAGUGCUauuuuuagacaugcGucaGCGCCg -3'
miRNA:   3'- -AUGCUC-CGACGGU------UUCACGA--------------C---CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 31370 1.1 0.001132
Target:  5'- gUACGAGGCUGCCAAAGUGCUGGCGCCg -3'
miRNA:   3'- -AUGCUCCGACGGUUUCACGACCGCGG- -5'
21295 5' -57.3 NC_004778.3 + 34297 0.66 0.778713
Target:  5'- cUACGAGaGCaGCa--AGUGCcGGCGCg -3'
miRNA:   3'- -AUGCUC-CGaCGguuUCACGaCCGCGg -5'
21295 5' -57.3 NC_004778.3 + 51305 0.67 0.709753
Target:  5'- uUACGaAGGC-GgCAAAGUGCUucagccGcGCGCCg -3'
miRNA:   3'- -AUGC-UCCGaCgGUUUCACGA------C-CGCGG- -5'
21295 5' -57.3 NC_004778.3 + 51350 0.7 0.564853
Target:  5'- aACGGGGuCUGUacGAGUGUUGgucaGCGCCa -3'
miRNA:   3'- aUGCUCC-GACGguUUCACGAC----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.