miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21296 3' -48.8 NC_004778.3 + 97400 0.66 0.997856
Target:  5'- gUGGCGGcgcgcaaggaAGCcgccgguucuaaucuGCAGCGAguGCAAAUGg -3'
miRNA:   3'- -ACUGCC----------UUG---------------UGUCGCUguCGUUUAUg -5'
21296 3' -48.8 NC_004778.3 + 112394 0.66 0.997694
Target:  5'- -cGCGGucGCGCAGCuuaGGCGGCAcGUAg -3'
miRNA:   3'- acUGCCu-UGUGUCG---CUGUCGUuUAUg -5'
21296 3' -48.8 NC_004778.3 + 56445 0.66 0.997694
Target:  5'- aUGugGG-ACACGaucCGAUGGCAAGUGu -3'
miRNA:   3'- -ACugCCuUGUGUc--GCUGUCGUUUAUg -5'
21296 3' -48.8 NC_004778.3 + 85572 0.66 0.997694
Target:  5'- cGACGucAUAC-GCGugGGCGAcguGUACg -3'
miRNA:   3'- aCUGCcuUGUGuCGCugUCGUU---UAUG- -5'
21296 3' -48.8 NC_004778.3 + 111513 0.66 0.997694
Target:  5'- gUGACGGuGCGCcuuuugGGCGaaacauacaagGCGGCGAuaGUGCa -3'
miRNA:   3'- -ACUGCCuUGUG------UCGC-----------UGUCGUU--UAUG- -5'
21296 3' -48.8 NC_004778.3 + 127572 0.66 0.997694
Target:  5'- aUGAUGGAACGCcAGUacCAGUccGUGCg -3'
miRNA:   3'- -ACUGCCUUGUG-UCGcuGUCGuuUAUG- -5'
21296 3' -48.8 NC_004778.3 + 8898 0.66 0.997243
Target:  5'- gGACGGGGuggcgcgcCACGGCGcCGGCGGc--- -3'
miRNA:   3'- aCUGCCUU--------GUGUCGCuGUCGUUuaug -5'
21296 3' -48.8 NC_004778.3 + 90887 0.66 0.997243
Target:  5'- aGGCGGAc----GCGGCAGUuuGUACa -3'
miRNA:   3'- aCUGCCUuguguCGCUGUCGuuUAUG- -5'
21296 3' -48.8 NC_004778.3 + 95942 0.66 0.997243
Target:  5'- -cACGGAgGCGCAGCG-CGGCcg--GCg -3'
miRNA:   3'- acUGCCU-UGUGUCGCuGUCGuuuaUG- -5'
21296 3' -48.8 NC_004778.3 + 129444 0.66 0.997243
Target:  5'- -cGCGGcgUACAGCGcCAGCAuuUGu -3'
miRNA:   3'- acUGCCuuGUGUCGCuGUCGUuuAUg -5'
21296 3' -48.8 NC_004778.3 + 15631 0.66 0.997243
Target:  5'- uUGGCGGuggaGAUGC-GCGGCAGCAcuuugGCg -3'
miRNA:   3'- -ACUGCC----UUGUGuCGCUGUCGUuua--UG- -5'
21296 3' -48.8 NC_004778.3 + 121677 0.66 0.99694
Target:  5'- cGGCGGcGcuuaccucaccuuuaGCGCGGCGAC-GCuAGUGCa -3'
miRNA:   3'- aCUGCC-U---------------UGUGUCGCUGuCGuUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 33818 0.66 0.996722
Target:  5'- -cACGGAcguGCAC-GCGGCAGCc--UGCg -3'
miRNA:   3'- acUGCCU---UGUGuCGCUGUCGuuuAUG- -5'
21296 3' -48.8 NC_004778.3 + 53091 0.66 0.996666
Target:  5'- gUGGCGGAggcggcugaaacgGCAgAGCGcCGGCGAcguuguaaucGUACc -3'
miRNA:   3'- -ACUGCCU-------------UGUgUCGCuGUCGUU----------UAUG- -5'
21296 3' -48.8 NC_004778.3 + 34035 0.67 0.995721
Target:  5'- aGACGGAagucacgcucgacauAcCGCAGC-ACAGCGuggAGUACg -3'
miRNA:   3'- aCUGCCU---------------U-GUGUCGcUGUCGU---UUAUG- -5'
21296 3' -48.8 NC_004778.3 + 82316 0.67 0.995721
Target:  5'- uUGGCGuAACGCAGCacaggacuggcaaaGCAGCGAAUAa -3'
miRNA:   3'- -ACUGCcUUGUGUCGc-------------UGUCGUUUAUg -5'
21296 3' -48.8 NC_004778.3 + 17349 0.67 0.995436
Target:  5'- -cGCGGGGCGCuAGCuGACGuCAAAUAUa -3'
miRNA:   3'- acUGCCUUGUG-UCG-CUGUcGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 39461 0.67 0.995436
Target:  5'- -cGCGuGGACGCA-UGACGGCAAacgGUGCa -3'
miRNA:   3'- acUGC-CUUGUGUcGCUGUCGUU---UAUG- -5'
21296 3' -48.8 NC_004778.3 + 45553 0.67 0.995436
Target:  5'- -----cAGCAuCAGCGACAGCAgcAGUGCg -3'
miRNA:   3'- acugccUUGU-GUCGCUGUCGU--UUAUG- -5'
21296 3' -48.8 NC_004778.3 + 1308 0.67 0.995436
Target:  5'- gUGACGGccuucauuuucGCGCAGUugGACGGCuuGUAUg -3'
miRNA:   3'- -ACUGCCu----------UGUGUCG--CUGUCGuuUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.