miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21296 3' -48.8 NC_004778.3 + 111594 0.67 0.992761
Target:  5'- gGACGGcGCGCGGUGuuacgcGCGcCGAGUACg -3'
miRNA:   3'- aCUGCCuUGUGUCGC------UGUcGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 43409 0.7 0.964732
Target:  5'- aGGCGugcGAGC-CGGCgGACAGCGAcgACa -3'
miRNA:   3'- aCUGC---CUUGuGUCG-CUGUCGUUuaUG- -5'
21296 3' -48.8 NC_004778.3 + 70270 0.7 0.964732
Target:  5'- gGACGGcguGCGCGGCcGCGGCAuauuuagGCg -3'
miRNA:   3'- aCUGCCu--UGUGUCGcUGUCGUuua----UG- -5'
21296 3' -48.8 NC_004778.3 + 10272 0.69 0.974209
Target:  5'- -cGCGGGAC-CGGCGGCGcauuGCAAAgGCg -3'
miRNA:   3'- acUGCCUUGuGUCGCUGU----CGUUUaUG- -5'
21296 3' -48.8 NC_004778.3 + 82966 0.69 0.981684
Target:  5'- gUGACGcu-CAUGGCGGCGGCuuauGAUAUg -3'
miRNA:   3'- -ACUGCcuuGUGUCGCUGUCGu---UUAUG- -5'
21296 3' -48.8 NC_004778.3 + 75770 0.68 0.986902
Target:  5'- cUGGCGGcaagcaugugcgcaAACACGGCcucgGGCAAAUACg -3'
miRNA:   3'- -ACUGCC--------------UUGUGUCGcug-UCGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 63911 0.68 0.988965
Target:  5'- uUGACGaGACGaccuuuuccaAGCGACuGCGGGUGCu -3'
miRNA:   3'- -ACUGCcUUGUg---------UCGCUGuCGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 29452 0.68 0.988965
Target:  5'- cUGGCGuauACGCaauauGGCGACAGCGuggcGUGCa -3'
miRNA:   3'- -ACUGCcu-UGUG-----UCGCUGUCGUu---UAUG- -5'
21296 3' -48.8 NC_004778.3 + 124364 0.67 0.991634
Target:  5'- aGACcGGAC-CGGCGGCGGCug--ACg -3'
miRNA:   3'- aCUGcCUUGuGUCGCUGUCGuuuaUG- -5'
21296 3' -48.8 NC_004778.3 + 65747 0.7 0.964732
Target:  5'- aGACGGcguuuGGCGCAGCGagccggGCGGUGAcgGCg -3'
miRNA:   3'- aCUGCC-----UUGUGUCGC------UGUCGUUuaUG- -5'
21296 3' -48.8 NC_004778.3 + 15163 0.7 0.953046
Target:  5'- -uGCGGGACACGcGCGACAacGCGAccgGCu -3'
miRNA:   3'- acUGCCUUGUGU-CGCUGU--CGUUua-UG- -5'
21296 3' -48.8 NC_004778.3 + 81754 0.71 0.933777
Target:  5'- cGGCGGGugGCGgaccgacuGCGcCGGUAGGUGCg -3'
miRNA:   3'- aCUGCCUugUGU--------CGCuGUCGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 124315 0.76 0.734798
Target:  5'- cGGCGuGGGCACGGCGucuucCGGCGAGUAa -3'
miRNA:   3'- aCUGC-CUUGUGUCGCu----GUCGUUUAUg -5'
21296 3' -48.8 NC_004778.3 + 81846 0.75 0.795516
Target:  5'- uUGGCGGAucgggaGCGGCGGCGGUAGAc-- -3'
miRNA:   3'- -ACUGCCUug----UGUCGCUGUCGUUUaug -5'
21296 3' -48.8 NC_004778.3 + 94614 0.74 0.850162
Target:  5'- cGACGaGGAUACAGUGgu-GCAAAUGCg -3'
miRNA:   3'- aCUGC-CUUGUGUCGCuguCGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 30492 0.74 0.850162
Target:  5'- -aAUGGAAC-CGGCaGugGGCAAAUGCa -3'
miRNA:   3'- acUGCCUUGuGUCG-CugUCGUUUAUG- -5'
21296 3' -48.8 NC_004778.3 + 14351 0.73 0.877631
Target:  5'- aGGCGGuucgaaaugcgcugcAACGCGcGCGACAGCAAcaACa -3'
miRNA:   3'- aCUGCC---------------UUGUGU-CGCUGUCGUUuaUG- -5'
21296 3' -48.8 NC_004778.3 + 63014 0.73 0.889568
Target:  5'- cGGCGGAACcCAGCaACAGCGuuUGa -3'
miRNA:   3'- aCUGCCUUGuGUCGcUGUCGUuuAUg -5'
21296 3' -48.8 NC_004778.3 + 88686 0.72 0.910142
Target:  5'- gGACGGGaugucgccGCGCAGCaaGCGGCGcGUGCg -3'
miRNA:   3'- aCUGCCU--------UGUGUCGc-UGUCGUuUAUG- -5'
21296 3' -48.8 NC_004778.3 + 56972 0.71 0.928279
Target:  5'- cGGCGuGAACACGGCGcuggaccuguGCGGCGGGccagGCg -3'
miRNA:   3'- aCUGC-CUUGUGUCGC----------UGUCGUUUa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.