miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21296 5' -59.3 NC_004778.3 + 85371 0.66 0.759206
Target:  5'- cGCGUCCaUGaCAucGCCGcCGCAaacgccCGCgugGGCg -3'
miRNA:   3'- -CGCAGG-ACgGU--UGGC-GCGU------GCGa--CCG- -5'
21296 5' -59.3 NC_004778.3 + 43255 0.66 0.759206
Target:  5'- uGCGcagcagCC-GCCGguaguaagGCCGCGCGCGCUcGUc -3'
miRNA:   3'- -CGCa-----GGaCGGU--------UGGCGCGUGCGAcCG- -5'
21296 5' -59.3 NC_004778.3 + 64317 0.66 0.759206
Target:  5'- cGCGUCaagcucggcgGCCAcgGgCGCGaCGCGCUGaGUg -3'
miRNA:   3'- -CGCAGga--------CGGU--UgGCGC-GUGCGAC-CG- -5'
21296 5' -59.3 NC_004778.3 + 1887 0.66 0.756379
Target:  5'- -aGUgCUgGCCAGCCGCuGCAgguuugauuauaacCGCcGGCg -3'
miRNA:   3'- cgCAgGA-CGGUUGGCG-CGU--------------GCGaCCG- -5'
21296 5' -59.3 NC_004778.3 + 121540 0.66 0.740182
Target:  5'- aGCG-CCgccgGCCAGCaacaCGCcCACGCcGGCc -3'
miRNA:   3'- -CGCaGGa---CGGUUG----GCGcGUGCGaCCG- -5'
21296 5' -59.3 NC_004778.3 + 124245 0.66 0.740182
Target:  5'- aCGgaggCC-GCCAACCGCGCgcaucagcGCGCcGuGCa -3'
miRNA:   3'- cGCa---GGaCGGUUGGCGCG--------UGCGaC-CG- -5'
21296 5' -59.3 NC_004778.3 + 107867 0.66 0.730528
Target:  5'- aGCGgCUggGCCAucuuGCCGCaaaGCACGUgGGCu -3'
miRNA:   3'- -CGCaGGa-CGGU----UGGCG---CGUGCGaCCG- -5'
21296 5' -59.3 NC_004778.3 + 80417 0.66 0.730528
Target:  5'- cGCGUCaaaguacggcGCCAGCCGCaccGCGCGCa--- -3'
miRNA:   3'- -CGCAGga--------CGGUUGGCG---CGUGCGaccg -5'
21296 5' -59.3 NC_004778.3 + 64780 0.66 0.729558
Target:  5'- gGCG-CCgaugGCCAAUaugcuuguucgggCGaCGCGCGCUGcGCc -3'
miRNA:   3'- -CGCaGGa---CGGUUG-------------GC-GCGUGCGAC-CG- -5'
21296 5' -59.3 NC_004778.3 + 43991 0.66 0.729558
Target:  5'- cGCGUCg-GaCGGCCGCGCaauuagcGCGCUGuaGCg -3'
miRNA:   3'- -CGCAGgaCgGUUGGCGCG-------UGCGAC--CG- -5'
21296 5' -59.3 NC_004778.3 + 61959 0.66 0.724695
Target:  5'- cGCGUUCUcgaacaugucggggcGCUuGCCGCuGCGCG-UGGCc -3'
miRNA:   3'- -CGCAGGA---------------CGGuUGGCG-CGUGCgACCG- -5'
21296 5' -59.3 NC_004778.3 + 93013 0.66 0.720791
Target:  5'- cCGUUCUcgGCCGAagCGUGCACGUgcGGCu -3'
miRNA:   3'- cGCAGGA--CGGUUg-GCGCGUGCGa-CCG- -5'
21296 5' -59.3 NC_004778.3 + 83588 0.66 0.720791
Target:  5'- aUGUUCUGCagauaauGACCGgGCAUGCuuucgauguagUGGCg -3'
miRNA:   3'- cGCAGGACGg------UUGGCgCGUGCG-----------ACCG- -5'
21296 5' -59.3 NC_004778.3 + 121842 0.66 0.720791
Target:  5'- cGCGggCCUGCacguGaaGCGCACGCgcaGCg -3'
miRNA:   3'- -CGCa-GGACGgu--UggCGCGUGCGac-CG- -5'
21296 5' -59.3 NC_004778.3 + 20384 0.66 0.720791
Target:  5'- -gGUCCaacUGCCGGCagGCGCACaaGgaGGCc -3'
miRNA:   3'- cgCAGG---ACGGUUGg-CGCGUG--CgaCCG- -5'
21296 5' -59.3 NC_004778.3 + 23851 0.66 0.720791
Target:  5'- -aGUUUcgGCCAGuuuCUGCGCACGCUaGCg -3'
miRNA:   3'- cgCAGGa-CGGUU---GGCGCGUGCGAcCG- -5'
21296 5' -59.3 NC_004778.3 + 38452 0.66 0.720791
Target:  5'- gGCG-CgCgGUCG--CGUGCGCGCUGGCg -3'
miRNA:   3'- -CGCaG-GaCGGUugGCGCGUGCGACCG- -5'
21296 5' -59.3 NC_004778.3 + 4725 0.66 0.720791
Target:  5'- aGUGgccagUCUGCUAACgCGgcacaGCGCGCUGGg -3'
miRNA:   3'- -CGCa----GGACGGUUG-GCg----CGUGCGACCg -5'
21296 5' -59.3 NC_004778.3 + 104026 0.66 0.71098
Target:  5'- gGgGUCCaGCgAGCCGCcguuguacgcGUACGCUuGGUa -3'
miRNA:   3'- -CgCAGGaCGgUUGGCG----------CGUGCGA-CCG- -5'
21296 5' -59.3 NC_004778.3 + 34427 0.67 0.701104
Target:  5'- cGCGgCgUGCCcguACUGCuguacacggGCACGCUGcGCg -3'
miRNA:   3'- -CGCaGgACGGu--UGGCG---------CGUGCGAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.