miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21297 5' -62.4 NC_004778.3 + 29716 0.66 0.588897
Target:  5'- gGCGCGCUCAuguuGCcaaCGuGGCCgaaaucgacaaaGUGUCGCu -3'
miRNA:   3'- aCGCGCGAGU----CGa--GC-CCGG------------CGCAGUG- -5'
21297 5' -62.4 NC_004778.3 + 36702 0.66 0.578987
Target:  5'- cGCGCGC-CGGUUCcaaaugcGG-CGCGUCAUg -3'
miRNA:   3'- aCGCGCGaGUCGAGc------CCgGCGCAGUG- -5'
21297 5' -62.4 NC_004778.3 + 11930 0.66 0.578987
Target:  5'- gGCGCGUUUuGCUuuaaCGGGuCCGCG-CAa -3'
miRNA:   3'- aCGCGCGAGuCGA----GCCC-GGCGCaGUg -5'
21297 5' -62.4 NC_004778.3 + 124284 0.66 0.569114
Target:  5'- gGCGCGCUUcaagaaugcugaAGCgCGGcGCCgGCGUgggCACg -3'
miRNA:   3'- aCGCGCGAG------------UCGaGCC-CGG-CGCA---GUG- -5'
21297 5' -62.4 NC_004778.3 + 107769 0.66 0.559283
Target:  5'- cGuCGCGCUCG--UCGGGg-GCGUCGCg -3'
miRNA:   3'- aC-GCGCGAGUcgAGCCCggCGCAGUG- -5'
21297 5' -62.4 NC_004778.3 + 113892 0.66 0.559283
Target:  5'- gGCGCGUcgGGCgaaggCGGcGCCGCGgguuccUCGCu -3'
miRNA:   3'- aCGCGCGagUCGa----GCC-CGGCGC------AGUG- -5'
21297 5' -62.4 NC_004778.3 + 95506 0.66 0.559283
Target:  5'- aGCuCGUUguGgUCGGGCCGCGcC-Ca -3'
miRNA:   3'- aCGcGCGAguCgAGCCCGGCGCaGuG- -5'
21297 5' -62.4 NC_004778.3 + 95779 0.66 0.559283
Target:  5'- cGCGCGg-CAGCgcgCcGGCCGCGcugCGCc -3'
miRNA:   3'- aCGCGCgaGUCGa--GcCCGGCGCa--GUG- -5'
21297 5' -62.4 NC_004778.3 + 28140 0.66 0.5495
Target:  5'- gUGCGCGCUUcgucguGUUCGcGCUGCGaagCGCa -3'
miRNA:   3'- -ACGCGCGAGu-----CGAGCcCGGCGCa--GUG- -5'
21297 5' -62.4 NC_004778.3 + 70490 0.66 0.5495
Target:  5'- gGUGCGCUaug--UGGGCCGCGUgCAa -3'
miRNA:   3'- aCGCGCGAgucgaGCCCGGCGCA-GUg -5'
21297 5' -62.4 NC_004778.3 + 35906 0.66 0.54755
Target:  5'- uUGUcCGC-CAGCUCGGGCgauugguacaaaGCGUCGg -3'
miRNA:   3'- -ACGcGCGaGUCGAGCCCGg-----------CGCAGUg -5'
21297 5' -62.4 NC_004778.3 + 64317 0.66 0.530101
Target:  5'- cGCGUcaaGCUCGGCggccaCGGGC-GCGaCGCg -3'
miRNA:   3'- aCGCG---CGAGUCGa----GCCCGgCGCaGUG- -5'
21297 5' -62.4 NC_004778.3 + 86130 0.66 0.530101
Target:  5'- aUGCGCGCcgaguUCAacGCgcaCGGGCCGUuugCGCa -3'
miRNA:   3'- -ACGCGCG-----AGU--CGa--GCCCGGCGca-GUG- -5'
21297 5' -62.4 NC_004778.3 + 33209 0.67 0.510958
Target:  5'- -uCGCGCUCGGC-CGGGCgCaaGUcCGCa -3'
miRNA:   3'- acGCGCGAGUCGaGCCCG-GcgCA-GUG- -5'
21297 5' -62.4 NC_004778.3 + 8997 0.67 0.510958
Target:  5'- aGCGUGCaauauuUgGGCggCGGGCUGCauuuGUCGCa -3'
miRNA:   3'- aCGCGCG------AgUCGa-GCCCGGCG----CAGUG- -5'
21297 5' -62.4 NC_004778.3 + 80512 0.67 0.481879
Target:  5'- cGCGCaGCUC-GCUCaGGCUGUcguagauucgcggGUCGCg -3'
miRNA:   3'- aCGCG-CGAGuCGAGcCCGGCG-------------CAGUG- -5'
21297 5' -62.4 NC_004778.3 + 8889 0.67 0.473586
Target:  5'- gGCGCGCcaCGGCgccGGCgGCGUCAa -3'
miRNA:   3'- aCGCGCGa-GUCGagcCCGgCGCAGUg -5'
21297 5' -62.4 NC_004778.3 + 68246 0.68 0.44648
Target:  5'- cUGCGuCGCUgGcGCUCGGGCUGUucgaaCACa -3'
miRNA:   3'- -ACGC-GCGAgU-CGAGCCCGGCGca---GUG- -5'
21297 5' -62.4 NC_004778.3 + 118955 0.68 0.426295
Target:  5'- gGCGcCGCUgGGcCUCGuaauugugcgcgccGGCCGCGcCGCg -3'
miRNA:   3'- aCGC-GCGAgUC-GAGC--------------CCGGCGCaGUG- -5'
21297 5' -62.4 NC_004778.3 + 27797 0.69 0.403306
Target:  5'- cGCGCuGCaccgCAuGCaCGGGCCGCuuGUCGCg -3'
miRNA:   3'- aCGCG-CGa---GU-CGaGCCCGGCG--CAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.