miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21298 5' -63.1 NC_004778.3 + 26791 0.66 0.594522
Target:  5'- uGG-CGUGgGCGGaauuguacagcgacaGCGUGCACGUgCCGu -3'
miRNA:   3'- -CCgGCACgUGCCg--------------CGCACGUGCG-GGC- -5'
21298 5' -63.1 NC_004778.3 + 94840 0.66 0.593548
Target:  5'- --aCGUGC-CGGUGgGuUGCGCGCCg- -3'
miRNA:   3'- ccgGCACGuGCCGCgC-ACGUGCGGgc -5'
21298 5' -63.1 NC_004778.3 + 106626 0.66 0.593548
Target:  5'- cGGCCaauaguUGCGCGuuuuGCGCGcgcaGCGCGCUCa -3'
miRNA:   3'- -CCGGc-----ACGUGC----CGCGCa---CGUGCGGGc -5'
21298 5' -63.1 NC_004778.3 + 127053 0.66 0.592573
Target:  5'- gGGCuaaaguacucgagCGUGC-CGu--CGUGCACGCCCGg -3'
miRNA:   3'- -CCG-------------GCACGuGCcgcGCACGUGCGGGC- -5'
21298 5' -63.1 NC_004778.3 + 121771 0.66 0.583816
Target:  5'- cGGCCG---ACGGCGUGgaccGCGCGCUg- -3'
miRNA:   3'- -CCGGCacgUGCCGCGCa---CGUGCGGgc -5'
21298 5' -63.1 NC_004778.3 + 65446 0.66 0.583816
Target:  5'- -uCUGUGCAaacguUGGCGCgGUGgGCGUCCa -3'
miRNA:   3'- ccGGCACGU-----GCCGCG-CACgUGCGGGc -5'
21298 5' -63.1 NC_004778.3 + 99032 0.66 0.583816
Target:  5'- cGGCaacgCGU-CGCGGCGCu--CACGCCCa -3'
miRNA:   3'- -CCG----GCAcGUGCCGCGcacGUGCGGGc -5'
21298 5' -63.1 NC_004778.3 + 73666 0.66 0.574117
Target:  5'- cGCCGaauUGCGCGuGUacacgaGCGUGCACGCggaaCGa -3'
miRNA:   3'- cCGGC---ACGUGC-CG------CGCACGUGCGg---GC- -5'
21298 5' -63.1 NC_004778.3 + 1746 0.66 0.574117
Target:  5'- -aCgGUGUACGGCGUaagcuccaGCAUGCCCa -3'
miRNA:   3'- ccGgCACGUGCCGCGca------CGUGCGGGc -5'
21298 5' -63.1 NC_004778.3 + 19288 0.66 0.574117
Target:  5'- uGUCGUGUucgaaACaGCGCcgcucGCGCGCCCGa -3'
miRNA:   3'- cCGGCACG-----UGcCGCGca---CGUGCGGGC- -5'
21298 5' -63.1 NC_004778.3 + 6390 0.66 0.574117
Target:  5'- cGCCGUcGUAaaaCGCGuUGCugGCCCGc -3'
miRNA:   3'- cCGGCA-CGUgccGCGC-ACGugCGGGC- -5'
21298 5' -63.1 NC_004778.3 + 49843 0.66 0.574117
Target:  5'- gGGCCccGCACgGGCGCGcuUGCGgGCUg- -3'
miRNA:   3'- -CCGGcaCGUG-CCGCGC--ACGUgCGGgc -5'
21298 5' -63.1 NC_004778.3 + 16158 0.66 0.574117
Target:  5'- cGCUGUGCgACGuGCGCGUcGCggauaacaACGCCa- -3'
miRNA:   3'- cCGGCACG-UGC-CGCGCA-CG--------UGCGGgc -5'
21298 5' -63.1 NC_004778.3 + 89776 0.66 0.574117
Target:  5'- cGCUGUgacuGCAaaacuUGGauuCGUGCGCGCCCGg -3'
miRNA:   3'- cCGGCA----CGU-----GCCgc-GCACGUGCGGGC- -5'
21298 5' -63.1 NC_004778.3 + 129285 0.66 0.574117
Target:  5'- cGCCGaacaaaUGC-UGGCGC-UGUACGCCgCGg -3'
miRNA:   3'- cCGGC------ACGuGCCGCGcACGUGCGG-GC- -5'
21298 5' -63.1 NC_004778.3 + 116760 0.66 0.574117
Target:  5'- cGCCGgucgGCugacUGGCGaCGUGUACGCUg- -3'
miRNA:   3'- cCGGCa---CGu---GCCGC-GCACGUGCGGgc -5'
21298 5' -63.1 NC_004778.3 + 26615 0.66 0.574117
Target:  5'- -uUCG-GUACGGCaCGUGCACGCUg- -3'
miRNA:   3'- ccGGCaCGUGCCGcGCACGUGCGGgc -5'
21298 5' -63.1 NC_004778.3 + 32965 0.66 0.573149
Target:  5'- uGGCUGUGCGgccgcguCGaCGUGUGUACGUuuGc -3'
miRNA:   3'- -CCGGCACGU-------GCcGCGCACGUGCGggC- -5'
21298 5' -63.1 NC_004778.3 + 38280 0.66 0.571214
Target:  5'- gGGCC-UGCgcuucacugcggacGCGGacgGCGUGCGCGCUa- -3'
miRNA:   3'- -CCGGcACG--------------UGCCg--CGCACGUGCGGgc -5'
21298 5' -63.1 NC_004778.3 + 6847 0.66 0.568315
Target:  5'- -cCUGUGUggacgcagGCGGCGCGUugaucuuugaaucgaGCGCGUCCa -3'
miRNA:   3'- ccGGCACG--------UGCCGCGCA---------------CGUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.