Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21299 | 3' | -53.6 | NC_004778.3 | + | 114825 | 0.66 | 0.959769 |
Target: 5'- gGGCCuaCGUgACUaaGUGGggccgugcgcaaacGCUUCGCGg -3' miRNA: 3'- -CCGGcgGCA-UGAaaCACC--------------UGAAGCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 108308 | 0.66 | 0.95715 |
Target: 5'- aGGCUGCCG-AgUUUGUaGcUUUCGCGa -3' miRNA: 3'- -CCGGCGGCaUgAAACAcCuGAAGCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 121378 | 0.66 | 0.95715 |
Target: 5'- -cUCGCCGcAgUUUGUGGACguuaGCGa -3' miRNA: 3'- ccGGCGGCaUgAAACACCUGaag-CGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 34682 | 0.66 | 0.949032 |
Target: 5'- cGCCGCCGcACUUgaUGGACauaagcagcaCGCGg -3' miRNA: 3'- cCGGCGGCaUGAAacACCUGaa--------GCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 64169 | 0.67 | 0.939953 |
Target: 5'- uGGCCGCCGaGCUUgacgcguucGUGGugacgaACgaCGCGg -3' miRNA: 3'- -CCGGCGGCaUGAAa--------CACC------UGaaGCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 39519 | 0.68 | 0.915333 |
Target: 5'- uGCUGCCcgacaacauggugcaGUACUUUGUGGGCacggUGCu -3' miRNA: 3'- cCGGCGG---------------CAUGAAACACCUGaa--GCGc -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 33609 | 0.68 | 0.912945 |
Target: 5'- cGCCGCCGUGC-----GGACggcCGCGc -3' miRNA: 3'- cCGGCGGCAUGaaacaCCUGaa-GCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 67636 | 0.69 | 0.85719 |
Target: 5'- cGGCaCG-UGUACgagGUGGACUUCGaCGc -3' miRNA: 3'- -CCG-GCgGCAUGaaaCACCUGAAGC-GC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 57017 | 0.69 | 0.841032 |
Target: 5'- uGCCGCCuacACUUUGUGGcgcagcccGCUaugUCGCGu -3' miRNA: 3'- cCGGCGGca-UGAAACACC--------UGA---AGCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 89877 | 0.72 | 0.729943 |
Target: 5'- uGCCGCUGUGCagcgugGUGGGCgcaaGCGg -3' miRNA: 3'- cCGGCGGCAUGaaa---CACCUGaag-CGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 71215 | 0.75 | 0.534334 |
Target: 5'- aGGCCGCUGUGCagcgGcUGGACgcggccUCGCGa -3' miRNA: 3'- -CCGGCGGCAUGaaa-C-ACCUGa-----AGCGC- -5' |
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21299 | 3' | -53.6 | NC_004778.3 | + | 33187 | 1.1 | 0.003714 |
Target: 5'- gGGCCGCCGUACUUUGUGGACUUCGCGc -3' miRNA: 3'- -CCGGCGGCAUGAAACACCUGAAGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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