miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 90945 0.66 0.849366
Target:  5'- uGGCGUAAGUCuUGCcuaaACcguGACCGcCGGCAa -3'
miRNA:   3'- -CCGCGUUCAG-GCG----UG---UUGGC-GUCGUg -5'
21299 5' -56.5 NC_004778.3 + 74967 0.66 0.847753
Target:  5'- gGGCGCAAGgcgguguacuugCCGgGCGuGCCGCuauccGGCAa -3'
miRNA:   3'- -CCGCGUUCa-----------GGCgUGU-UGGCG-----UCGUg -5'
21299 5' -56.5 NC_004778.3 + 2548 0.66 0.841224
Target:  5'- gGGCGCGGGcacgucggccaCCGCGCGGaaGUuucGGCACa -3'
miRNA:   3'- -CCGCGUUCa----------GGCGUGUUggCG---UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 7364 0.66 0.841224
Target:  5'- uGCGCGug-CCGguCGACCGC-GUACc -3'
miRNA:   3'- cCGCGUucaGGCguGUUGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 114075 0.66 0.841224
Target:  5'- cGCGCucgcucUCCGCgaGCGAggaacCCGCGGCGCc -3'
miRNA:   3'- cCGCGuuc---AGGCG--UGUU-----GGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 8487 0.66 0.841224
Target:  5'- aGGCGCGu-UCCGCA--AgCGCGGCGu -3'
miRNA:   3'- -CCGCGUucAGGCGUguUgGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 34313 0.66 0.841224
Target:  5'- uGCGCAGcuugucgCCGCcgGCGACCGCGucgucguacGCGCg -3'
miRNA:   3'- cCGCGUUca-----GGCG--UGUUGGCGU---------CGUG- -5'
21299 5' -56.5 NC_004778.3 + 106615 0.66 0.841224
Target:  5'- uGCGCGuuuugCgCGCGCAGCgCGCucAGCGCg -3'
miRNA:   3'- cCGCGUuca--G-GCGUGUUG-GCG--UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 47174 0.66 0.832887
Target:  5'- --gGCAAGUCCGuCACGAUgacgcaCGUAGCGu -3'
miRNA:   3'- ccgCGUUCAGGC-GUGUUG------GCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 118786 0.66 0.832887
Target:  5'- cGGCGCGgccGG-CgCGCACAauuacgagGCCcaGCGGCGCc -3'
miRNA:   3'- -CCGCGU---UCaG-GCGUGU--------UGG--CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 21294 0.66 0.832887
Target:  5'- cGGCGCuc--CCGaCGCcGCagaGCGGCACg -3'
miRNA:   3'- -CCGCGuucaGGC-GUGuUGg--CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 121970 0.66 0.832887
Target:  5'- aGCGCGGGcgacaucaaCCGCAUuACgCGCGGCAa -3'
miRNA:   3'- cCGCGUUCa--------GGCGUGuUG-GCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 127575 0.66 0.832887
Target:  5'- uGCGCAAaacaauuUCCGCGCAcaACUuCAGCGCc -3'
miRNA:   3'- cCGCGUUc------AGGCGUGU--UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 23541 0.66 0.832887
Target:  5'- cGCGCAAGUauaUGcCGCAGUCGUAGCGa -3'
miRNA:   3'- cCGCGUUCAg--GC-GUGUUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 125846 0.66 0.832887
Target:  5'- cGGCGUug--CgGUACAACCcUAGCACg -3'
miRNA:   3'- -CCGCGuucaGgCGUGUUGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 25876 0.66 0.832043
Target:  5'- gGGUGUguGcCgGCGCGACCGUgggcgcuGGCACg -3'
miRNA:   3'- -CCGCGuuCaGgCGUGUUGGCG-------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 97407 0.66 0.832043
Target:  5'- cGCGCAAGgaagCCGC-CGGuucuaauCUGCAGCGa -3'
miRNA:   3'- cCGCGUUCa---GGCGuGUU-------GGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 9698 0.66 0.830349
Target:  5'- cGGCGCGGcGUCguguuccaaaacggCGCGCAaaucgucgauacGCgCGCGGUACg -3'
miRNA:   3'- -CCGCGUU-CAG--------------GCGUGU------------UG-GCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 38181 0.66 0.824362
Target:  5'- cGCGCcuAGU-CGCAuCAAgUCGCGGCACa -3'
miRNA:   3'- cCGCGu-UCAgGCGU-GUU-GGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 107730 0.66 0.824362
Target:  5'- -aCGCAuuguGgaaccugCUGCGCuugGACCGCAGCACc -3'
miRNA:   3'- ccGCGUu---Ca------GGCGUG---UUGGCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.