miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21301 3' -54.8 NC_004778.3 + 68784 0.66 0.929037
Target:  5'- gGUGGccacaAGGCCGGUAuuguugauuauGCAgGugUUGCa -3'
miRNA:   3'- gCACC-----UCCGGCCGUu----------UGUgUugGACG- -5'
21301 3' -54.8 NC_004778.3 + 13427 0.66 0.929037
Target:  5'- -uUGGAuGcGCUGGCGAGggauUACGACCgGCa -3'
miRNA:   3'- gcACCU-C-CGGCCGUUU----GUGUUGGaCG- -5'
21301 3' -54.8 NC_004778.3 + 90505 0.66 0.929037
Target:  5'- uCGcGGucaguGGCCGcGCAGuuACACAACCaagaacagcUGCa -3'
miRNA:   3'- -GCaCCu----CCGGC-CGUU--UGUGUUGG---------ACG- -5'
21301 3' -54.8 NC_004778.3 + 15604 0.66 0.917898
Target:  5'- -uUGGcguGGUCGcGCGGAgGCGGCgCUGCg -3'
miRNA:   3'- gcACCu--CCGGC-CGUUUgUGUUG-GACG- -5'
21301 3' -54.8 NC_004778.3 + 74788 0.66 0.917315
Target:  5'- aCGUGGAuuugccggauagcGGCacgccCGGCAAguACACcGCCUuGCg -3'
miRNA:   3'- -GCACCU-------------CCG-----GCCGUU--UGUGuUGGA-CG- -5'
21301 3' -54.8 NC_004778.3 + 121696 0.66 0.911958
Target:  5'- gCGUGGGcguguugcuGGCCGGCG-GCGCuuACCUc- -3'
miRNA:   3'- -GCACCU---------CCGGCCGUuUGUGu-UGGAcg -5'
21301 3' -54.8 NC_004778.3 + 30832 0.66 0.911958
Target:  5'- cCGcUGGAGG-UGGUAGGCAUGACgCUGa -3'
miRNA:   3'- -GC-ACCUCCgGCCGUUUGUGUUG-GACg -5'
21301 3' -54.8 NC_004778.3 + 124244 0.66 0.910127
Target:  5'- --cGGAGGCCGcCAAccgcGCGCAucagcgcgccgugcAUCUGCa -3'
miRNA:   3'- gcaCCUCCGGCcGUU----UGUGU--------------UGGACG- -5'
21301 3' -54.8 NC_004778.3 + 82388 0.66 0.909512
Target:  5'- uCGaUGGGaguGGCCGGCAuuucuagaagcguGCGCAACguUUGCa -3'
miRNA:   3'- -GC-ACCU---CCGGCCGUu------------UGUGUUG--GACG- -5'
21301 3' -54.8 NC_004778.3 + 47913 0.66 0.905771
Target:  5'- gCGUGGAGaacuugacGUCGGCGuguauGCGCcacaaGGCUUGCg -3'
miRNA:   3'- -GCACCUC--------CGGCCGUu----UGUG-----UUGGACG- -5'
21301 3' -54.8 NC_004778.3 + 35846 0.66 0.905771
Target:  5'- -uUGGGGGCCaguGGCGGACugGuACCa-- -3'
miRNA:   3'- gcACCUCCGG---CCGUUUGugU-UGGacg -5'
21301 3' -54.8 NC_004778.3 + 43411 0.66 0.905771
Target:  5'- gCGUGcGA-GCCGGCGGACagcgacgacaGCGACCacgagcguUGCg -3'
miRNA:   3'- -GCAC-CUcCGGCCGUUUG----------UGUUGG--------ACG- -5'
21301 3' -54.8 NC_004778.3 + 49385 0.66 0.899341
Target:  5'- aGUuGGGGCCGGCcAGCGCcGCguacucgguauaCUGCu -3'
miRNA:   3'- gCAcCUCCGGCCGuUUGUGuUG------------GACG- -5'
21301 3' -54.8 NC_004778.3 + 96571 0.66 0.899341
Target:  5'- gGUGG-GGCCaGCGggUcguggaGCAcCCUGCu -3'
miRNA:   3'- gCACCuCCGGcCGUuuG------UGUuGGACG- -5'
21301 3' -54.8 NC_004778.3 + 77291 0.66 0.899341
Target:  5'- uGUGcAGGCCGGCGAGUACuguuACUgGCc -3'
miRNA:   3'- gCACcUCCGGCCGUUUGUGu---UGGaCG- -5'
21301 3' -54.8 NC_004778.3 + 114372 0.67 0.89267
Target:  5'- gCGgGcGAGGCCGGCccuugcguAGCaACGGCCgGCu -3'
miRNA:   3'- -GCaC-CUCCGGCCGu-------UUG-UGUUGGaCG- -5'
21301 3' -54.8 NC_004778.3 + 25742 0.67 0.885762
Target:  5'- uGUcGGcAGGCCGGCcAGCAUAcugauuauuagcACUUGUa -3'
miRNA:   3'- gCA-CC-UCCGGCCGuUUGUGU------------UGGACG- -5'
21301 3' -54.8 NC_004778.3 + 20060 0.67 0.885762
Target:  5'- --aGcGAGGUCGGCGccGACGCAcguaagauaGCaCUGCg -3'
miRNA:   3'- gcaC-CUCCGGCCGU--UUGUGU---------UG-GACG- -5'
21301 3' -54.8 NC_004778.3 + 43577 0.67 0.881506
Target:  5'- uCGUGGucGcugucgucgcuguccGCCGGCucGCAC-GCCUGCc -3'
miRNA:   3'- -GCACCu-C---------------CGGCCGuuUGUGuUGGACG- -5'
21301 3' -54.8 NC_004778.3 + 64469 0.67 0.878622
Target:  5'- aCGccGAGGCCGGCGAAUgccgaguaaACGAgUUGUg -3'
miRNA:   3'- -GCacCUCCGGCCGUUUG---------UGUUgGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.