miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21302 3' -51.7 NC_004778.3 + 73463 0.66 0.985454
Target:  5'- cGAAa---UugGCGGuCGUGCGCGUGa -3'
miRNA:   3'- uCUUgguaAugUGCCuGCACGUGCGC- -5'
21302 3' -51.7 NC_004778.3 + 94876 0.66 0.985454
Target:  5'- cAGAcGCCcgUGCugGGauugcaggaGCGcGCACGCu -3'
miRNA:   3'- -UCU-UGGuaAUGugCC---------UGCaCGUGCGc -5'
21302 3' -51.7 NC_004778.3 + 26609 0.66 0.985454
Target:  5'- -aAGCgAUUcggUACGGcACGUGCACGCu -3'
miRNA:   3'- ucUUGgUAAu--GUGCC-UGCACGUGCGc -5'
21302 3' -51.7 NC_004778.3 + 9496 0.66 0.985454
Target:  5'- uGAuuGCCG--ACGCGGagGCGUaccGCGCGCGu -3'
miRNA:   3'- uCU--UGGUaaUGUGCC--UGCA---CGUGCGC- -5'
21302 3' -51.7 NC_004778.3 + 38376 0.66 0.985276
Target:  5'- --uGCCAguuucUUACGCGGgucggcgGCGUGCACGa- -3'
miRNA:   3'- ucuUGGU-----AAUGUGCC-------UGCACGUGCgc -5'
21302 3' -51.7 NC_004778.3 + 83234 0.66 0.984915
Target:  5'- -cGGCCAgcUGCACGGGCGauuggcugcguuguUGCagacGCGCGg -3'
miRNA:   3'- ucUUGGUa-AUGUGCCUGC--------------ACG----UGCGC- -5'
21302 3' -51.7 NC_004778.3 + 74957 0.66 0.983597
Target:  5'- cGGugUAcUUGC-CGGGCGUGC-CGCu -3'
miRNA:   3'- uCUugGU-AAUGuGCCUGCACGuGCGc -5'
21302 3' -51.7 NC_004778.3 + 32475 0.66 0.983597
Target:  5'- --cGCCuUUGCaccaGCGGuCGUgGCACGCGa -3'
miRNA:   3'- ucuUGGuAAUG----UGCCuGCA-CGUGCGC- -5'
21302 3' -51.7 NC_004778.3 + 5093 0.66 0.983597
Target:  5'- -aAACCGgucugUGCGCGaACGUGCAgcuCGCGc -3'
miRNA:   3'- ucUUGGUa----AUGUGCcUGCACGU---GCGC- -5'
21302 3' -51.7 NC_004778.3 + 94660 0.66 0.983597
Target:  5'- cAGAccgucACCAUUcGCGCGGGCGaaucguacUGCuuCGCGc -3'
miRNA:   3'- -UCU-----UGGUAA-UGUGCCUGC--------ACGu-GCGC- -5'
21302 3' -51.7 NC_004778.3 + 121126 0.66 0.983597
Target:  5'- cGGcGCCGggGCAgCGGGCGcgGCcCGCGc -3'
miRNA:   3'- -UCuUGGUaaUGU-GCCUGCa-CGuGCGC- -5'
21302 3' -51.7 NC_004778.3 + 63891 0.66 0.983597
Target:  5'- cGAACacugcuuaAUgaaagGCGCGcacGACGUGCGCGUGa -3'
miRNA:   3'- uCUUGg-------UAa----UGUGC---CUGCACGUGCGC- -5'
21302 3' -51.7 NC_004778.3 + 116760 0.66 0.97935
Target:  5'- --cGCCGgucggcugACugGcGACGUGUACGCu -3'
miRNA:   3'- ucuUGGUaa------UGugC-CUGCACGUGCGc -5'
21302 3' -51.7 NC_004778.3 + 123865 0.66 0.97935
Target:  5'- uAGAGCg---ACACcGACGUGC-CGCGu -3'
miRNA:   3'- -UCUUGguaaUGUGcCUGCACGuGCGC- -5'
21302 3' -51.7 NC_004778.3 + 7143 0.66 0.976944
Target:  5'- aGGAAuCCGUcucgGCGGGCG-GCGCGCc -3'
miRNA:   3'- -UCUU-GGUAaug-UGCCUGCaCGUGCGc -5'
21302 3' -51.7 NC_004778.3 + 37127 0.66 0.976944
Target:  5'- cGAagGCCAUU---CGGACGUuuuGCGCGCa -3'
miRNA:   3'- uCU--UGGUAAuguGCCUGCA---CGUGCGc -5'
21302 3' -51.7 NC_004778.3 + 32811 0.67 0.975405
Target:  5'- -uGGCCAUUGCGgacgaaaaccaguuuCGGACGcgGCugGCc -3'
miRNA:   3'- ucUUGGUAAUGU---------------GCCUGCa-CGugCGc -5'
21302 3' -51.7 NC_004778.3 + 48139 0.67 0.974338
Target:  5'- ---uCUGUUGCGC--GCGUGCGCGCGu -3'
miRNA:   3'- ucuuGGUAAUGUGccUGCACGUGCGC- -5'
21302 3' -51.7 NC_004778.3 + 112145 0.67 0.974338
Target:  5'- -cGACCAgcACGCauugguuguuGGGCGUGUACGUa -3'
miRNA:   3'- ucUUGGUaaUGUG----------CCUGCACGUGCGc -5'
21302 3' -51.7 NC_004778.3 + 70301 0.67 0.971524
Target:  5'- cGGGGCUuuuguauggUGCaaACGGACGacaugcaguUGCACGCGg -3'
miRNA:   3'- -UCUUGGua-------AUG--UGCCUGC---------ACGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.