Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21303 | 3' | -57.9 | NC_004778.3 | + | 121717 | 0.66 | 0.7675 |
Target: 5'- uGCaggGCGCcaaaacGGCcgGCGuGGGCGUGUUGc -3' miRNA: 3'- uCGa--CGCG------UCGuaCGU-CCUGCACGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 103138 | 0.66 | 0.7675 |
Target: 5'- uGCucgUGUGCGGCG-GCGGGugGgUGCa- -3' miRNA: 3'- uCG---ACGCGUCGUaCGUCCugC-ACGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 65750 | 0.66 | 0.7675 |
Target: 5'- cGGCguuugGCGCAGCGaGCcGGGCGgugacgGCg- -3' miRNA: 3'- -UCGa----CGCGUCGUaCGuCCUGCa-----CGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 127640 | 0.66 | 0.757825 |
Target: 5'- aAGUUGUcaaCGGCAgguucgGCAaaauGGACGUGCUGc -3' miRNA: 3'- -UCGACGc--GUCGUa-----CGU----CCUGCACGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 77654 | 0.66 | 0.738138 |
Target: 5'- cGCUGUuaaCAGUcUGCGGGACGcgaaccgGCUGa -3' miRNA: 3'- uCGACGc--GUCGuACGUCCUGCa------CGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 104470 | 0.66 | 0.738138 |
Target: 5'- cAGCUGCGCuGCGUGCAacaccucGACGcGUa- -3' miRNA: 3'- -UCGACGCGuCGUACGUc------CUGCaCGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 44000 | 0.66 | 0.738138 |
Target: 5'- ---cGCGCGGCcgGCGGGuauuuaACG-GCUGa -3' miRNA: 3'- ucgaCGCGUCGuaCGUCC------UGCaCGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 33757 | 0.66 | 0.738138 |
Target: 5'- uGCUgGCGCGGCAcugGCAucGaGugGUGCUc -3' miRNA: 3'- uCGA-CGCGUCGUa--CGU--C-CugCACGAc -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 48137 | 0.66 | 0.728147 |
Target: 5'- uGUUGCGC-GCGUGCGcgcguacuGGcGCGUGCUu -3' miRNA: 3'- uCGACGCGuCGUACGU--------CC-UGCACGAc -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 43379 | 0.66 | 0.728147 |
Target: 5'- uGUUGcCGCAGCAcgcguacguuuUGCGGcaGGCGUGCg- -3' miRNA: 3'- uCGAC-GCGUCGU-----------ACGUC--CUGCACGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 107898 | 0.67 | 0.718068 |
Target: 5'- gGGCUGCGCcGU-UGC-GGAaacgGUGCUGg -3' miRNA: 3'- -UCGACGCGuCGuACGuCCUg---CACGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 53257 | 0.67 | 0.718068 |
Target: 5'- uGCUGUgGCGGCGguugcUGCGGcGGCGguUGCUGc -3' miRNA: 3'- uCGACG-CGUCGU-----ACGUC-CUGC--ACGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 45681 | 0.67 | 0.711984 |
Target: 5'- uGGCgcgGCGCGGCAuuuuuuccuccUcauacagggugucggGCAGGugGUGCa- -3' miRNA: 3'- -UCGa--CGCGUCGU-----------A---------------CGUCCugCACGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 34421 | 0.67 | 0.707914 |
Target: 5'- cGGCaGCGCGGCGUGCccGuAC-UGCUGu -3' miRNA: 3'- -UCGaCGCGUCGUACGucC-UGcACGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 101468 | 0.67 | 0.707914 |
Target: 5'- cAGCaUGCGCgucaaGGUGUGCgaugAGGACG-GCUGc -3' miRNA: 3'- -UCG-ACGCG-----UCGUACG----UCCUGCaCGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 53152 | 0.67 | 0.707914 |
Target: 5'- uGCUGUgGCGGCGguugcgGCGGGGCcUGCg- -3' miRNA: 3'- uCGACG-CGUCGUa-----CGUCCUGcACGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 74967 | 0.67 | 0.707914 |
Target: 5'- gGGCgcaagGCGguGUAcuUGCcGGGCGUGCc- -3' miRNA: 3'- -UCGa----CGCguCGU--ACGuCCUGCACGac -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 77880 | 0.67 | 0.687415 |
Target: 5'- cGCU-CGguGCGcGCGGG-UGUGCUGa -3' miRNA: 3'- uCGAcGCguCGUaCGUCCuGCACGAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 60586 | 0.67 | 0.67709 |
Target: 5'- aAGCUGCGCAGCA-GCAcGAuCG-GcCUGa -3' miRNA: 3'- -UCGACGCGUCGUaCGUcCU-GCaC-GAC- -5' |
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21303 | 3' | -57.9 | NC_004778.3 | + | 38292 | 0.67 | 0.673984 |
Target: 5'- gAGCgGCGCAGCGggccugcgcuucacUGCGGacgcggacGGCGUGCg- -3' miRNA: 3'- -UCGaCGCGUCGU--------------ACGUC--------CUGCACGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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