miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21303 5' -55.8 NC_004778.3 + 8739 0.67 0.79891
Target:  5'- cGCCGCcgGCGCCG--UG-GCgcGCCAc -3'
miRNA:   3'- aCGGCGaaCGCGGUuuACaCGa-CGGU- -5'
21303 5' -55.8 NC_004778.3 + 8934 0.69 0.699678
Target:  5'- cGCCGCUgaagcugcUGCGCCAAAUGuUGggGUa- -3'
miRNA:   3'- aCGGCGA--------ACGCGGUUUAC-ACgaCGgu -5'
21303 5' -55.8 NC_004778.3 + 10438 0.66 0.859416
Target:  5'- aGUCGCgaGCGCCuuugcAAUGcGCcGCCGg -3'
miRNA:   3'- aCGGCGaaCGCGGu----UUACaCGaCGGU- -5'
21303 5' -55.8 NC_004778.3 + 15451 0.72 0.522714
Target:  5'- cGCCGCcuccgcgcgaccaCGCCAAA-GUGCUGCCGc -3'
miRNA:   3'- aCGGCGaac----------GCGGUUUaCACGACGGU- -5'
21303 5' -55.8 NC_004778.3 + 15574 0.66 0.859416
Target:  5'- aGCaguGCUUugauaucggcgGCGCCAAcgGUGCU-CCAg -3'
miRNA:   3'- aCGg--CGAA-----------CGCGGUUuaCACGAcGGU- -5'
21303 5' -55.8 NC_004778.3 + 15709 0.66 0.859416
Target:  5'- cGCUGCUgcgcgagaUGCGCCAAuugauaaaaGUGUUGgCCGc -3'
miRNA:   3'- aCGGCGA--------ACGCGGUUua-------CACGAC-GGU- -5'
21303 5' -55.8 NC_004778.3 + 28976 0.7 0.604828
Target:  5'- aGCUGaUUGCGCU-AAUGUGCgcgGCCGc -3'
miRNA:   3'- aCGGCgAACGCGGuUUACACGa--CGGU- -5'
21303 5' -55.8 NC_004778.3 + 29341 0.66 0.851371
Target:  5'- cGCgCGCUggggUGCGCCAAGcG-GCUGUa- -3'
miRNA:   3'- aCG-GCGA----ACGCGGUUUaCaCGACGgu -5'
21303 5' -55.8 NC_004778.3 + 29352 0.74 0.424829
Target:  5'- cUGCCGCgUGCGCgAu-UG-GCUGCCGa -3'
miRNA:   3'- -ACGGCGaACGCGgUuuACaCGACGGU- -5'
21303 5' -55.8 NC_004778.3 + 33223 0.67 0.792374
Target:  5'- gGCCGCUgcaccguUGCGCCAGGcUcucuucgaacaaaaaGUGC-GCCAg -3'
miRNA:   3'- aCGGCGA-------ACGCGGUUU-A---------------CACGaCGGU- -5'
21303 5' -55.8 NC_004778.3 + 34210 1.08 0.002079
Target:  5'- gUGCCGCUUGCGCCAAAUGUGCUGCCAc -3'
miRNA:   3'- -ACGGCGAACGCGGUUUACACGACGGU- -5'
21303 5' -55.8 NC_004778.3 + 34504 0.68 0.710042
Target:  5'- cGCCGaCUcGCGCUAccgcGUGCUGCUu -3'
miRNA:   3'- aCGGC-GAaCGCGGUuua-CACGACGGu -5'
21303 5' -55.8 NC_004778.3 + 40086 0.66 0.843112
Target:  5'- cGUCGCagUGCGUCAAAUcGUGCaccgGCgCAa -3'
miRNA:   3'- aCGGCGa-ACGCGGUUUA-CACGa---CG-GU- -5'
21303 5' -55.8 NC_004778.3 + 43381 0.67 0.796118
Target:  5'- uUGCCGCagcacgcguacguuUUGCGgCAGGcGUGCgaGCCGg -3'
miRNA:   3'- -ACGGCG--------------AACGCgGUUUaCACGa-CGGU- -5'
21303 5' -55.8 NC_004778.3 + 45000 0.66 0.851371
Target:  5'- aGUCGCUgguuuuggaccuUGCGCCGGAcgccaggauUGUGgUGgCCAa -3'
miRNA:   3'- aCGGCGA------------ACGCGGUUU---------ACACgAC-GGU- -5'
21303 5' -55.8 NC_004778.3 + 45824 0.68 0.750688
Target:  5'- aUGCCGCgccGCGCCAAGca-GCUGUUu -3'
miRNA:   3'- -ACGGCGaa-CGCGGUUUacaCGACGGu -5'
21303 5' -55.8 NC_004778.3 + 52321 0.72 0.501557
Target:  5'- cGCCGCUgccuuuuCGCCAAAcGaGCUGCCGu -3'
miRNA:   3'- aCGGCGAac-----GCGGUUUaCaCGACGGU- -5'
21303 5' -55.8 NC_004778.3 + 56966 0.7 0.600607
Target:  5'- gUGCCGCggcgugaacacgGCGCUGGAccUGUGCggcggGCCAg -3'
miRNA:   3'- -ACGGCGaa----------CGCGGUUU--ACACGa----CGGU- -5'
21303 5' -55.8 NC_004778.3 + 58178 0.68 0.709008
Target:  5'- cGCCGCcgcCGCCGuguccgaaugcaaAGUGUGCUucGCCAa -3'
miRNA:   3'- aCGGCGaacGCGGU-------------UUACACGA--CGGU- -5'
21303 5' -55.8 NC_004778.3 + 60082 0.68 0.710042
Target:  5'- gGuuGUUUGCGCCAAGcuccucGUcGCUGCUg -3'
miRNA:   3'- aCggCGAACGCGGUUUa-----CA-CGACGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.