miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21304 3' -52.6 NC_004778.3 + 17811 0.66 0.968722
Target:  5'- -gUUguGGUcGaGCGCAC-GCAAAUGCa -3'
miRNA:   3'- gaAGguCCA-CaCGCGUGaCGUUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 94436 0.66 0.968722
Target:  5'- --aCgAGGacGUGCGCcauccGCUGCAAAUGUu -3'
miRNA:   3'- gaaGgUCCa-CACGCG-----UGACGUUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 33070 0.66 0.965472
Target:  5'- ---aCAGuGUGUuCGCGuCUGCGGGCGUg -3'
miRNA:   3'- gaagGUC-CACAcGCGU-GACGUUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 37980 0.66 0.961992
Target:  5'- --aCCAcGcGUGUcgccGCGCGCUGUuugAGACGCc -3'
miRNA:   3'- gaaGGU-C-CACA----CGCGUGACG---UUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 45229 0.66 0.958275
Target:  5'- -gUCCAGGacgccgcucGCGCGCUGaugguAGCGCu -3'
miRNA:   3'- gaAGGUCCaca------CGCGUGACgu---UUGCG- -5'
21304 3' -52.6 NC_004778.3 + 16665 0.66 0.958275
Target:  5'- uUUCUgugcuGGUGgggaUGgGCGCUGUGAGCGUg -3'
miRNA:   3'- gAAGGu----CCAC----ACgCGUGACGUUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 4046 0.66 0.957114
Target:  5'- -gUCCAGGUcgGCgGCACUGguGguguacuauuauauGCGCa -3'
miRNA:   3'- gaAGGUCCAcaCG-CGUGACguU--------------UGCG- -5'
21304 3' -52.6 NC_004778.3 + 98507 0.66 0.954317
Target:  5'- --cCCGGGcgcgGUGCGCGuCUGCAacaaauuaacAAUGUg -3'
miRNA:   3'- gaaGGUCCa---CACGCGU-GACGU----------UUGCG- -5'
21304 3' -52.6 NC_004778.3 + 121765 0.67 0.950113
Target:  5'- ---aCGGcGUGgaccGCGCGCUGCAGcagaacccGCGCc -3'
miRNA:   3'- gaagGUC-CACa---CGCGUGACGUU--------UGCG- -5'
21304 3' -52.6 NC_004778.3 + 29346 0.67 0.950113
Target:  5'- --gCUGGG-GUGCGCcaagcgGCUGUAcACGCa -3'
miRNA:   3'- gaaGGUCCaCACGCG------UGACGUuUGCG- -5'
21304 3' -52.6 NC_004778.3 + 38609 0.67 0.935986
Target:  5'- --gCCGGGUucGCGCguuacaAgUGCGAGCGCa -3'
miRNA:   3'- gaaGGUCCAcaCGCG------UgACGUUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 10278 0.67 0.930763
Target:  5'- --aCCGGcg--GCGCAUUGCAAAgGCg -3'
miRNA:   3'- gaaGGUCcacaCGCGUGACGUUUgCG- -5'
21304 3' -52.6 NC_004778.3 + 7463 0.68 0.927506
Target:  5'- -aUCCAGGUGaacauguuucaaUGUGCugUaGCAAuugcugggucaaacaGCGCg -3'
miRNA:   3'- gaAGGUCCAC------------ACGCGugA-CGUU---------------UGCG- -5'
21304 3' -52.6 NC_004778.3 + 106448 0.68 0.925283
Target:  5'- -gUCCAacgcGcUGaGCGCGCUGCGcGCGCa -3'
miRNA:   3'- gaAGGU----CcACaCGCGUGACGUuUGCG- -5'
21304 3' -52.6 NC_004778.3 + 15852 0.68 0.925283
Target:  5'- ----aGGGUGuUGUGCAUUGCAAugcCGCu -3'
miRNA:   3'- gaaggUCCAC-ACGCGUGACGUUu--GCG- -5'
21304 3' -52.6 NC_004778.3 + 95171 0.68 0.921292
Target:  5'- -gUCCAGGcgcaccugcccgucgGCGCACgGCGcGCGCg -3'
miRNA:   3'- gaAGGUCCaca------------CGCGUGaCGUuUGCG- -5'
21304 3' -52.6 NC_004778.3 + 10745 0.68 0.918955
Target:  5'- -cUCCGcGGgcugccgUGUGCGCGCcgccGUAAACGCc -3'
miRNA:   3'- gaAGGU-CC-------ACACGCGUGa---CGUUUGCG- -5'
21304 3' -52.6 NC_004778.3 + 112233 0.68 0.900783
Target:  5'- -gUCCAGGUGauagcacGCGggUUGCGAguACGCg -3'
miRNA:   3'- gaAGGUCCACa------CGCguGACGUU--UGCG- -5'
21304 3' -52.6 NC_004778.3 + 94306 0.69 0.894022
Target:  5'- -----cGGUuUGCGCGCUGCAcacuGCGCu -3'
miRNA:   3'- gaagguCCAcACGCGUGACGUu---UGCG- -5'
21304 3' -52.6 NC_004778.3 + 110219 0.69 0.887014
Target:  5'- -cUCCGaGUcGUGCGCGCUGUuuuacaacGACGCc -3'
miRNA:   3'- gaAGGUcCA-CACGCGUGACGu-------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.