Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21304 | 5' | -61.8 | NC_004778.3 | + | 39176 | 0.66 | 0.623022 |
Target: 5'- -cGCGCaaauuugcuugUCGcCCGUGUCGUACCUuucgcgacaGUCCa -3' miRNA: 3'- acCGCG-----------GGC-GGCACAGCAUGGA---------CGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 36865 | 0.68 | 0.491595 |
Target: 5'- aUGGCGCCgGCgGUGcgCGU-CUuggcgagcgcgguguUGCCCa -3' miRNA: 3'- -ACCGCGGgCGgCACa-GCAuGG---------------ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 36161 | 0.73 | 0.276404 |
Target: 5'- aUGGCguuGCCCGCCGUG-CGgUGCCauCCCa -3' miRNA: 3'- -ACCG---CGGGCGGCACaGC-AUGGacGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 35213 | 1.11 | 0.000594 |
Target: 5'- uUGGCGCCCGCCGUGUCGUACCUGCCCu -3' miRNA: 3'- -ACCGCGGGCGGCACAGCAUGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 32456 | 0.66 | 0.642827 |
Target: 5'- cGGCGCagCCGCugCGUGUCGccUUUGCaCCa -3' miRNA: 3'- aCCGCG--GGCG--GCACAGCauGGACG-GG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 32284 | 0.66 | 0.603243 |
Target: 5'- cGGCGgC-GCCGUGUCGgGCUggUGCUUa -3' miRNA: 3'- aCCGCgGgCGGCACAGCaUGG--ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 14727 | 0.66 | 0.632925 |
Target: 5'- aGGUGCCCGgU---UCGUACCcgcUGUCCg -3' miRNA: 3'- aCCGCGGGCgGcacAGCAUGG---ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 14350 | 0.68 | 0.525417 |
Target: 5'- cUGGCGuCCCGCCagcuGUGUCauGUugCUgguGCCg -3' miRNA: 3'- -ACCGC-GGGCGG----CACAG--CAugGA---CGGg -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 6974 | 0.69 | 0.460605 |
Target: 5'- gGGCGCCCGUCGUGgUGUuuCC-GCgCg -3' miRNA: 3'- aCCGCGGGCGGCACaGCAu-GGaCGgG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 4556 | 0.66 | 0.642827 |
Target: 5'- cGGCGCCCagcgcGCUGUGccgCGUuagcagacugGCCacUGUCCa -3' miRNA: 3'- aCCGCGGG-----CGGCACa--GCA----------UGG--ACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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