miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 3' -55.8 NC_004778.3 + 38509 0.66 0.884589
Target:  5'- uGGCAAUgCgCGCUagCG-CGCGCGACg -3'
miRNA:   3'- cUCGUUGgG-GUGAagGCuGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 60654 0.66 0.884589
Target:  5'- cGGGCAugCgCAUcaaCGAgGCGCGGCa -3'
miRNA:   3'- -CUCGUugGgGUGaagGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 88853 0.66 0.877406
Target:  5'- gGAGCGcacGCgCCGCUUgCuGCGCgGCGACa -3'
miRNA:   3'- -CUCGU---UGgGGUGAAgGcUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 39607 0.66 0.877406
Target:  5'- -cGCuGACCgCCACggacagUCCGGCGgGCAc- -3'
miRNA:   3'- cuCG-UUGG-GGUGa-----AGGCUGCgCGUug -5'
21311 3' -55.8 NC_004778.3 + 10433 0.66 0.869994
Target:  5'- cGAGCGccuuugcaauGCgCCGCcggUCCcGCGCGCAAUc -3'
miRNA:   3'- -CUCGU----------UGgGGUGa--AGGcUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 121579 0.66 0.86236
Target:  5'- cGGCGGCgaCACggCCGACGCGUg-- -3'
miRNA:   3'- cUCGUUGggGUGaaGGCUGCGCGuug -5'
21311 3' -55.8 NC_004778.3 + 53034 0.66 0.86236
Target:  5'- cAGCAACCgCCGCcacagcaaCCGcCGCcGCAGCa -3'
miRNA:   3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 43847 0.66 0.86236
Target:  5'- -cGCGGCCg----UCCGACGCgGCAACa -3'
miRNA:   3'- cuCGUUGGggugaAGGCUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 120971 0.66 0.86236
Target:  5'- cGGGCcGCgCCCGCUgccCCGGCGcCGCc-- -3'
miRNA:   3'- -CUCGuUG-GGGUGAa--GGCUGC-GCGuug -5'
21311 3' -55.8 NC_004778.3 + 53079 0.66 0.86236
Target:  5'- cAGCAACCgCCGCcgcagcaaCCGcCGCcGCAGCa -3'
miRNA:   3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 96590 0.66 0.854511
Target:  5'- gGAGC-ACCCUGCUagCCaGCGCgGCGGCc -3'
miRNA:   3'- -CUCGuUGGGGUGAa-GGcUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 17440 0.66 0.854511
Target:  5'- -uGCGGCCCCGCcguUUCaacugCGAaaucuCGCGCAGCc -3'
miRNA:   3'- cuCGUUGGGGUG---AAG-----GCU-----GCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 114047 0.66 0.854511
Target:  5'- -cGCGGCgCCGCcuucgcCCGACGCGCccGGCc -3'
miRNA:   3'- cuCGUUGgGGUGaa----GGCUGCGCG--UUG- -5'
21311 3' -55.8 NC_004778.3 + 6838 0.67 0.846453
Target:  5'- cGGGCGcCCCCugUgUgGACGCagGCGGCg -3'
miRNA:   3'- -CUCGUuGGGGugAaGgCUGCG--CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 53124 0.67 0.837355
Target:  5'- cAGCAACCgccgccacagcaaCCGCcgCCGGCGUuaguGCAACa -3'
miRNA:   3'- cUCGUUGG-------------GGUGaaGGCUGCG----CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 115479 0.67 0.828023
Target:  5'- --aCGGCCaCCACUcacgccaaaugcCCGGCGUGCAGCa -3'
miRNA:   3'- cucGUUGG-GGUGAa-----------GGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 43097 0.67 0.82022
Target:  5'- -cGCGGCCUUACUaCCGGCggcugcuGCGCAAg -3'
miRNA:   3'- cuCGUUGGGGUGAaGGCUG-------CGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 81730 0.67 0.812273
Target:  5'- uAGCGGCgCCUGCgauaUCCGGCGCGgCGGg -3'
miRNA:   3'- cUCGUUG-GGGUGa---AGGCUGCGC-GUUg -5'
21311 3' -55.8 NC_004778.3 + 49836 0.67 0.812273
Target:  5'- aAGCAcuggGCCCCGCa-CgGGCGCGCuuGCg -3'
miRNA:   3'- cUCGU----UGGGGUGaaGgCUGCGCGu-UG- -5'
21311 3' -55.8 NC_004778.3 + 82744 0.67 0.803282
Target:  5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3'
miRNA:   3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.