Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 53034 | 0.66 | 0.86236 |
Target: 5'- cAGCAACCgCCGCcacagcaaCCGcCGCcGCAGCa -3' miRNA: 3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 96590 | 0.66 | 0.854511 |
Target: 5'- gGAGC-ACCCUGCUagCCaGCGCgGCGGCc -3' miRNA: 3'- -CUCGuUGGGGUGAa-GGcUGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 114047 | 0.66 | 0.854511 |
Target: 5'- -cGCGGCgCCGCcuucgcCCGACGCGCccGGCc -3' miRNA: 3'- cuCGUUGgGGUGaa----GGCUGCGCG--UUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 121579 | 0.66 | 0.86236 |
Target: 5'- cGGCGGCgaCACggCCGACGCGUg-- -3' miRNA: 3'- cUCGUUGggGUGaaGGCUGCGCGuug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 10433 | 0.66 | 0.869994 |
Target: 5'- cGAGCGccuuugcaauGCgCCGCcggUCCcGCGCGCAAUc -3' miRNA: 3'- -CUCGU----------UGgGGUGa--AGGcUGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 88853 | 0.66 | 0.877406 |
Target: 5'- gGAGCGcacGCgCCGCUUgCuGCGCgGCGACa -3' miRNA: 3'- -CUCGU---UGgGGUGAAgGcUGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 60654 | 0.66 | 0.884589 |
Target: 5'- cGGGCAugCgCAUcaaCGAgGCGCGGCa -3' miRNA: 3'- -CUCGUugGgGUGaagGCUgCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 38509 | 0.66 | 0.884589 |
Target: 5'- uGGCAAUgCgCGCUagCG-CGCGCGACg -3' miRNA: 3'- cUCGUUGgG-GUGAagGCuGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 53079 | 0.66 | 0.86236 |
Target: 5'- cAGCAACCgCCGCcgcagcaaCCGcCGCcGCAGCa -3' miRNA: 3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 17440 | 0.66 | 0.854511 |
Target: 5'- -uGCGGCCCCGCcguUUCaacugCGAaaucuCGCGCAGCc -3' miRNA: 3'- cuCGUUGGGGUG---AAG-----GCU-----GCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 39607 | 0.66 | 0.877406 |
Target: 5'- -cGCuGACCgCCACggacagUCCGGCGgGCAc- -3' miRNA: 3'- cuCG-UUGG-GGUGa-----AGGCUGCgCGUug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 43847 | 0.66 | 0.86236 |
Target: 5'- -cGCGGCCg----UCCGACGCgGCAACa -3' miRNA: 3'- cuCGUUGGggugaAGGCUGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 120971 | 0.66 | 0.86236 |
Target: 5'- cGGGCcGCgCCCGCUgccCCGGCGcCGCc-- -3' miRNA: 3'- -CUCGuUG-GGGUGAa--GGCUGC-GCGuug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 81730 | 0.67 | 0.812273 |
Target: 5'- uAGCGGCgCCUGCgauaUCCGGCGCGgCGGg -3' miRNA: 3'- cUCGUUG-GGGUGa---AGGCUGCGC-GUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 6838 | 0.67 | 0.846453 |
Target: 5'- cGGGCGcCCCCugUgUgGACGCagGCGGCg -3' miRNA: 3'- -CUCGUuGGGGugAaGgCUGCG--CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 53124 | 0.67 | 0.837355 |
Target: 5'- cAGCAACCgccgccacagcaaCCGCcgCCGGCGUuaguGCAACa -3' miRNA: 3'- cUCGUUGG-------------GGUGaaGGCUGCG----CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 115479 | 0.67 | 0.828023 |
Target: 5'- --aCGGCCaCCACUcacgccaaaugcCCGGCGUGCAGCa -3' miRNA: 3'- cucGUUGG-GGUGAa-----------GGCUGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 43097 | 0.67 | 0.82022 |
Target: 5'- -cGCGGCCUUACUaCCGGCggcugcuGCGCAAg -3' miRNA: 3'- cuCGUUGGGGUGAaGGCUG-------CGCGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 49836 | 0.67 | 0.812273 |
Target: 5'- aAGCAcuggGCCCCGCa-CgGGCGCGCuuGCg -3' miRNA: 3'- cUCGU----UGGGGUGaaGgCUGCGCGu-UG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 82744 | 0.67 | 0.803282 |
Target: 5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3' miRNA: 3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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