Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 82744 | 0.67 | 0.803282 |
Target: 5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3' miRNA: 3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 106312 | 0.68 | 0.746281 |
Target: 5'- -cGCAGCCCCAgccCCGguuugauuGCGCGCAAa -3' miRNA: 3'- cuCGUUGGGGUgaaGGC--------UGCGCGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 98829 | 0.68 | 0.765801 |
Target: 5'- uGAGCAugCCCAaugccaCGGaGCGCGGCa -3' miRNA: 3'- -CUCGUugGGGUgaag--GCUgCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 33364 | 0.68 | 0.77538 |
Target: 5'- cGGGCGACgUCGCggaCGACGCGCc-- -3' miRNA: 3'- -CUCGUUGgGGUGaagGCUGCGCGuug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 114518 | 0.68 | 0.765801 |
Target: 5'- aGGGcCGGCCUCGCccgCGGCGCGCAGg -3' miRNA: 3'- -CUC-GUUGGGGUGaagGCUGCGCGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 117181 | 0.68 | 0.791355 |
Target: 5'- gGAGCcACCCCGCaaaugggcuUUCCGcugaauacaacgauGCGCGCuAACc -3' miRNA: 3'- -CUCGuUGGGGUG---------AAGGC--------------UGCGCG-UUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 56627 | 0.68 | 0.784827 |
Target: 5'- -cGCAACCuCCACUucgUCCGA-GCuCAACa -3' miRNA: 3'- cuCGUUGG-GGUGA---AGGCUgCGcGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 47953 | 0.68 | 0.778229 |
Target: 5'- aGGGCAGCgCCGCUUUguucgaaagcacgCGccaguacgcgcgcacGCGCGCAACa -3' miRNA: 3'- -CUCGUUGgGGUGAAG-------------GC---------------UGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 41218 | 0.69 | 0.73636 |
Target: 5'- uGGGC-ACCgCGCUg--GACGCGCGACu -3' miRNA: 3'- -CUCGuUGGgGUGAaggCUGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 67227 | 0.69 | 0.726345 |
Target: 5'- gGAGUcGCUCCA--UCCGAUGCGCGu- -3' miRNA: 3'- -CUCGuUGGGGUgaAGGCUGCGCGUug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 107922 | 0.69 | 0.70607 |
Target: 5'- -cGCGACgCCGC--CCGACgaGCGCGACg -3' miRNA: 3'- cuCGUUGgGGUGaaGGCUG--CGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 88348 | 0.69 | 0.70607 |
Target: 5'- cGGCAACCCCAUUaUCGAagucauuCGCAACa -3' miRNA: 3'- cUCGUUGGGGUGAaGGCUgc-----GCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 85592 | 0.69 | 0.70607 |
Target: 5'- uGGCGACCCUGCUg-CGugG-GCGACg -3' miRNA: 3'- cUCGUUGGGGUGAagGCugCgCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 95185 | 0.69 | 0.70607 |
Target: 5'- uGAGCGguuguaacuGCCCgGCUgCCGACGgGCuGCu -3' miRNA: 3'- -CUCGU---------UGGGgUGAaGGCUGCgCGuUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 36695 | 0.69 | 0.73636 |
Target: 5'- uGGGCAACaCCgCGCUcgCCaaGACGCGCAc- -3' miRNA: 3'- -CUCGUUG-GG-GUGAa-GG--CUGCGCGUug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 25705 | 0.7 | 0.675196 |
Target: 5'- -uGUAGuuCCGgUUCUGGCGCGCGAUg -3' miRNA: 3'- cuCGUUggGGUgAAGGCUGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 90699 | 0.71 | 0.623124 |
Target: 5'- cGAGCGcUgCCACUaUCCGACGCuGCAGu -3' miRNA: 3'- -CUCGUuGgGGUGA-AGGCUGCG-CGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 5815 | 0.71 | 0.581539 |
Target: 5'- aGAGCAGaUCgGCUUCCG-CGCGCAGa -3' miRNA: 3'- -CUCGUUgGGgUGAAGGCuGCGCGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 70012 | 0.72 | 0.571218 |
Target: 5'- cAGCGACgCCA-UUCUGGCGCGCAu- -3' miRNA: 3'- cUCGUUGgGGUgAAGGCUGCGCGUug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 38071 | 0.72 | 0.530449 |
Target: 5'- uGAGUcaAAUgCCGCUgcggCgCGACGCGCAACa -3' miRNA: 3'- -CUCG--UUGgGGUGAa---G-GCUGCGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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