miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 3' -55.8 NC_004778.3 + 41183 1.1 0.001847
Target:  5'- cGAGCAACCCCACUUCCGACGCGCAACa -3'
miRNA:   3'- -CUCGUUGGGGUGAAGGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 39092 0.75 0.398431
Target:  5'- cGGCGACCaCGCcgaUCCGcACGCGCAGCg -3'
miRNA:   3'- cUCGUUGGgGUGa--AGGC-UGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 73459 0.75 0.389819
Target:  5'- -cGCGGCgCCACUgUCCGA-GCGCGACa -3'
miRNA:   3'- cuCGUUGgGGUGA-AGGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 121403 0.74 0.461968
Target:  5'- aGAGCGACCCCGCcgcagaccCCGACuCGCcGCa -3'
miRNA:   3'- -CUCGUUGGGGUGaa------GGCUGcGCGuUG- -5'
21311 3' -55.8 NC_004778.3 + 38071 0.72 0.530449
Target:  5'- uGAGUcaAAUgCCGCUgcggCgCGACGCGCAACa -3'
miRNA:   3'- -CUCG--UUGgGGUGAa---G-GCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 107839 0.72 0.540552
Target:  5'- uGGCGGCCuCCACgcgcaaggUUUCGuCGCGCGACa -3'
miRNA:   3'- cUCGUUGG-GGUG--------AAGGCuGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 114222 0.72 0.550718
Target:  5'- aAGaCAugCUCACUUUCGGcCGCGCGGCc -3'
miRNA:   3'- cUC-GUugGGGUGAAGGCU-GCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 90560 0.72 0.560942
Target:  5'- uGGCAGCgCUCGCcgCCGA-GCGCAGCg -3'
miRNA:   3'- cUCGUUG-GGGUGaaGGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 70012 0.72 0.571218
Target:  5'- cAGCGACgCCA-UUCUGGCGCGCAu- -3'
miRNA:   3'- cUCGUUGgGGUgAAGGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 90699 0.71 0.623124
Target:  5'- cGAGCGcUgCCACUaUCCGACGCuGCAGu -3'
miRNA:   3'- -CUCGUuGgGGUGA-AGGCUGCG-CGUUg -5'
21311 3' -55.8 NC_004778.3 + 5815 0.71 0.581539
Target:  5'- aGAGCAGaUCgGCUUCCG-CGCGCAGa -3'
miRNA:   3'- -CUCGUUgGGgUGAAGGCuGCGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 25705 0.7 0.675196
Target:  5'- -uGUAGuuCCGgUUCUGGCGCGCGAUg -3'
miRNA:   3'- cuCGUUggGGUgAAGGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 88348 0.69 0.70607
Target:  5'- cGGCAACCCCAUUaUCGAagucauuCGCAACa -3'
miRNA:   3'- cUCGUUGGGGUGAaGGCUgc-----GCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 95185 0.69 0.70607
Target:  5'- uGAGCGguuguaacuGCCCgGCUgCCGACGgGCuGCu -3'
miRNA:   3'- -CUCGU---------UGGGgUGAaGGCUGCgCGuUG- -5'
21311 3' -55.8 NC_004778.3 + 107922 0.69 0.70607
Target:  5'- -cGCGACgCCGC--CCGACgaGCGCGACg -3'
miRNA:   3'- cuCGUUGgGGUGaaGGCUG--CGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 85592 0.69 0.70607
Target:  5'- uGGCGACCCUGCUg-CGugG-GCGACg -3'
miRNA:   3'- cUCGUUGGGGUGAagGCugCgCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 36695 0.69 0.73636
Target:  5'- uGGGCAACaCCgCGCUcgCCaaGACGCGCAc- -3'
miRNA:   3'- -CUCGUUG-GG-GUGAa-GG--CUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 41218 0.69 0.73636
Target:  5'- uGGGC-ACCgCGCUg--GACGCGCGACu -3'
miRNA:   3'- -CUCGuUGGgGUGAaggCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 67227 0.69 0.726345
Target:  5'- gGAGUcGCUCCA--UCCGAUGCGCGu- -3'
miRNA:   3'- -CUCGuUGGGGUgaAGGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 106312 0.68 0.746281
Target:  5'- -cGCAGCCCCAgccCCGguuugauuGCGCGCAAa -3'
miRNA:   3'- cuCGUUGGGGUgaaGGC--------UGCGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.