Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 114222 | 0.72 | 0.550718 |
|
Target: 5'- aAGaCAugCUCACUUUCGGcCGCGCGGCc -3' miRNA: 3'- cUC-GUugGGGUGAAGGCU-GCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 107839 | 0.72 | 0.540552 |
|
Target: 5'- uGGCGGCCuCCACgcgcaaggUUUCGuCGCGCGACa -3' miRNA: 3'- cUCGUUGG-GGUG--------AAGGCuGCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 38071 | 0.72 | 0.530449 |
|
Target: 5'- uGAGUcaAAUgCCGCUgcggCgCGACGCGCAACa -3' miRNA: 3'- -CUCG--UUGgGGUGAa---G-GCUGCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 121403 | 0.74 | 0.461968 |
|
Target: 5'- aGAGCGACCCCGCcgcagaccCCGACuCGCcGCa -3' miRNA: 3'- -CUCGUUGGGGUGaa------GGCUGcGCGuUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 39092 | 0.75 | 0.398431 |
|
Target: 5'- cGGCGACCaCGCcgaUCCGcACGCGCAGCg -3' miRNA: 3'- cUCGUUGGgGUGa--AGGC-UGCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 73459 | 0.75 | 0.389819 |
|
Target: 5'- -cGCGGCgCCACUgUCCGA-GCGCGACa -3' miRNA: 3'- cuCGUUGgGGUGA-AGGCUgCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 41183 | 1.1 | 0.001847 |
|
Target: 5'- cGAGCAACCCCACUUCCGACGCGCAACa -3' miRNA: 3'- -CUCGUUGGGGUGAAGGCUGCGCGUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home