miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 3' -55.8 NC_004778.3 + 5815 0.71 0.581539
Target:  5'- aGAGCAGaUCgGCUUCCG-CGCGCAGa -3'
miRNA:   3'- -CUCGUUgGGgUGAAGGCuGCGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 6838 0.67 0.846453
Target:  5'- cGGGCGcCCCCugUgUgGACGCagGCGGCg -3'
miRNA:   3'- -CUCGUuGGGGugAaGgCUGCG--CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 10433 0.66 0.869994
Target:  5'- cGAGCGccuuugcaauGCgCCGCcggUCCcGCGCGCAAUc -3'
miRNA:   3'- -CUCGU----------UGgGGUGa--AGGcUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 16507 0.67 0.803282
Target:  5'- uAGCGcACCCCugU--UGACGCGCAc- -3'
miRNA:   3'- cUCGU-UGGGGugAagGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 17440 0.66 0.854511
Target:  5'- -uGCGGCCCCGCcguUUCaacugCGAaaucuCGCGCAGCc -3'
miRNA:   3'- cuCGUUGGGGUG---AAG-----GCU-----GCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 25705 0.7 0.675196
Target:  5'- -uGUAGuuCCGgUUCUGGCGCGCGAUg -3'
miRNA:   3'- cuCGUUggGGUgAAGGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 33364 0.68 0.77538
Target:  5'- cGGGCGACgUCGCggaCGACGCGCc-- -3'
miRNA:   3'- -CUCGUUGgGGUGaagGCUGCGCGuug -5'
21311 3' -55.8 NC_004778.3 + 36695 0.69 0.73636
Target:  5'- uGGGCAACaCCgCGCUcgCCaaGACGCGCAc- -3'
miRNA:   3'- -CUCGUUG-GG-GUGAa-GG--CUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 38071 0.72 0.530449
Target:  5'- uGAGUcaAAUgCCGCUgcggCgCGACGCGCAACa -3'
miRNA:   3'- -CUCG--UUGgGGUGAa---G-GCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 38509 0.66 0.884589
Target:  5'- uGGCAAUgCgCGCUagCG-CGCGCGACg -3'
miRNA:   3'- cUCGUUGgG-GUGAagGCuGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 39092 0.75 0.398431
Target:  5'- cGGCGACCaCGCcgaUCCGcACGCGCAGCg -3'
miRNA:   3'- cUCGUUGGgGUGa--AGGC-UGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 39607 0.66 0.877406
Target:  5'- -cGCuGACCgCCACggacagUCCGGCGgGCAc- -3'
miRNA:   3'- cuCG-UUGG-GGUGa-----AGGCUGCgCGUug -5'
21311 3' -55.8 NC_004778.3 + 41183 1.1 0.001847
Target:  5'- cGAGCAACCCCACUUCCGACGCGCAACa -3'
miRNA:   3'- -CUCGUUGGGGUGAAGGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 41218 0.69 0.73636
Target:  5'- uGGGC-ACCgCGCUg--GACGCGCGACu -3'
miRNA:   3'- -CUCGuUGGgGUGAaggCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 43097 0.67 0.82022
Target:  5'- -cGCGGCCUUACUaCCGGCggcugcuGCGCAAg -3'
miRNA:   3'- cuCGUUGGGGUGAaGGCUG-------CGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 43847 0.66 0.86236
Target:  5'- -cGCGGCCg----UCCGACGCgGCAACa -3'
miRNA:   3'- cuCGUUGGggugaAGGCUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 47953 0.68 0.778229
Target:  5'- aGGGCAGCgCCGCUUUguucgaaagcacgCGccaguacgcgcgcacGCGCGCAACa -3'
miRNA:   3'- -CUCGUUGgGGUGAAG-------------GC---------------UGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 49836 0.67 0.812273
Target:  5'- aAGCAcuggGCCCCGCa-CgGGCGCGCuuGCg -3'
miRNA:   3'- cUCGU----UGGGGUGaaGgCUGCGCGu-UG- -5'
21311 3' -55.8 NC_004778.3 + 53034 0.66 0.86236
Target:  5'- cAGCAACCgCCGCcacagcaaCCGcCGCcGCAGCa -3'
miRNA:   3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 53079 0.66 0.86236
Target:  5'- cAGCAACCgCCGCcgcagcaaCCGcCGCcGCAGCa -3'
miRNA:   3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.