miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 3' -55.8 NC_004778.3 + 53124 0.67 0.837355
Target:  5'- cAGCAACCgccgccacagcaaCCGCcgCCGGCGUuaguGCAACa -3'
miRNA:   3'- cUCGUUGG-------------GGUGaaGGCUGCG----CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 56627 0.68 0.784827
Target:  5'- -cGCAACCuCCACUucgUCCGA-GCuCAACa -3'
miRNA:   3'- cuCGUUGG-GGUGA---AGGCUgCGcGUUG- -5'
21311 3' -55.8 NC_004778.3 + 60654 0.66 0.884589
Target:  5'- cGGGCAugCgCAUcaaCGAgGCGCGGCa -3'
miRNA:   3'- -CUCGUugGgGUGaagGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 67227 0.69 0.726345
Target:  5'- gGAGUcGCUCCA--UCCGAUGCGCGu- -3'
miRNA:   3'- -CUCGuUGGGGUgaAGGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 70012 0.72 0.571218
Target:  5'- cAGCGACgCCA-UUCUGGCGCGCAu- -3'
miRNA:   3'- cUCGUUGgGGUgAAGGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 73459 0.75 0.389819
Target:  5'- -cGCGGCgCCACUgUCCGA-GCGCGACa -3'
miRNA:   3'- cuCGUUGgGGUGA-AGGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 81730 0.67 0.812273
Target:  5'- uAGCGGCgCCUGCgauaUCCGGCGCGgCGGg -3'
miRNA:   3'- cUCGUUG-GGGUGa---AGGCUGCGC-GUUg -5'
21311 3' -55.8 NC_004778.3 + 82744 0.67 0.803282
Target:  5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3'
miRNA:   3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 85592 0.69 0.70607
Target:  5'- uGGCGACCCUGCUg-CGugG-GCGACg -3'
miRNA:   3'- cUCGUUGGGGUGAagGCugCgCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 88348 0.69 0.70607
Target:  5'- cGGCAACCCCAUUaUCGAagucauuCGCAACa -3'
miRNA:   3'- cUCGUUGGGGUGAaGGCUgc-----GCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 88853 0.66 0.877406
Target:  5'- gGAGCGcacGCgCCGCUUgCuGCGCgGCGACa -3'
miRNA:   3'- -CUCGU---UGgGGUGAAgGcUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 90560 0.72 0.560942
Target:  5'- uGGCAGCgCUCGCcgCCGA-GCGCAGCg -3'
miRNA:   3'- cUCGUUG-GGGUGaaGGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 90699 0.71 0.623124
Target:  5'- cGAGCGcUgCCACUaUCCGACGCuGCAGu -3'
miRNA:   3'- -CUCGUuGgGGUGA-AGGCUGCG-CGUUg -5'
21311 3' -55.8 NC_004778.3 + 95185 0.69 0.70607
Target:  5'- uGAGCGguuguaacuGCCCgGCUgCCGACGgGCuGCu -3'
miRNA:   3'- -CUCGU---------UGGGgUGAaGGCUGCgCGuUG- -5'
21311 3' -55.8 NC_004778.3 + 96590 0.66 0.854511
Target:  5'- gGAGC-ACCCUGCUagCCaGCGCgGCGGCc -3'
miRNA:   3'- -CUCGuUGGGGUGAa-GGcUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 98829 0.68 0.765801
Target:  5'- uGAGCAugCCCAaugccaCGGaGCGCGGCa -3'
miRNA:   3'- -CUCGUugGGGUgaag--GCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 106312 0.68 0.746281
Target:  5'- -cGCAGCCCCAgccCCGguuugauuGCGCGCAAa -3'
miRNA:   3'- cuCGUUGGGGUgaaGGC--------UGCGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 107839 0.72 0.540552
Target:  5'- uGGCGGCCuCCACgcgcaaggUUUCGuCGCGCGACa -3'
miRNA:   3'- cUCGUUGG-GGUG--------AAGGCuGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 107922 0.69 0.70607
Target:  5'- -cGCGACgCCGC--CCGACgaGCGCGACg -3'
miRNA:   3'- cuCGUUGgGGUGaaGGCUG--CGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 114047 0.66 0.854511
Target:  5'- -cGCGGCgCCGCcuucgcCCGACGCGCccGGCc -3'
miRNA:   3'- cuCGUUGgGGUGaa----GGCUGCGCG--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.