Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 121579 | 0.66 | 0.86236 |
Target: 5'- cGGCGGCgaCACggCCGACGCGUg-- -3' miRNA: 3'- cUCGUUGggGUGaaGGCUGCGCGuug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 121403 | 0.74 | 0.461968 |
Target: 5'- aGAGCGACCCCGCcgcagaccCCGACuCGCcGCa -3' miRNA: 3'- -CUCGUUGGGGUGaa------GGCUGcGCGuUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 120971 | 0.66 | 0.86236 |
Target: 5'- cGGGCcGCgCCCGCUgccCCGGCGcCGCc-- -3' miRNA: 3'- -CUCGuUG-GGGUGAa--GGCUGC-GCGuug -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 117181 | 0.68 | 0.791355 |
Target: 5'- gGAGCcACCCCGCaaaugggcuUUCCGcugaauacaacgauGCGCGCuAACc -3' miRNA: 3'- -CUCGuUGGGGUG---------AAGGC--------------UGCGCG-UUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 115479 | 0.67 | 0.828023 |
Target: 5'- --aCGGCCaCCACUcacgccaaaugcCCGGCGUGCAGCa -3' miRNA: 3'- cucGUUGG-GGUGAa-----------GGCUGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 114518 | 0.68 | 0.765801 |
Target: 5'- aGGGcCGGCCUCGCccgCGGCGCGCAGg -3' miRNA: 3'- -CUC-GUUGGGGUGaagGCUGCGCGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 114222 | 0.72 | 0.550718 |
Target: 5'- aAGaCAugCUCACUUUCGGcCGCGCGGCc -3' miRNA: 3'- cUC-GUugGGGUGAAGGCU-GCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 114047 | 0.66 | 0.854511 |
Target: 5'- -cGCGGCgCCGCcuucgcCCGACGCGCccGGCc -3' miRNA: 3'- cuCGUUGgGGUGaa----GGCUGCGCG--UUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 107922 | 0.69 | 0.70607 |
Target: 5'- -cGCGACgCCGC--CCGACgaGCGCGACg -3' miRNA: 3'- cuCGUUGgGGUGaaGGCUG--CGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 107839 | 0.72 | 0.540552 |
Target: 5'- uGGCGGCCuCCACgcgcaaggUUUCGuCGCGCGACa -3' miRNA: 3'- cUCGUUGG-GGUG--------AAGGCuGCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 106312 | 0.68 | 0.746281 |
Target: 5'- -cGCAGCCCCAgccCCGguuugauuGCGCGCAAa -3' miRNA: 3'- cuCGUUGGGGUgaaGGC--------UGCGCGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 98829 | 0.68 | 0.765801 |
Target: 5'- uGAGCAugCCCAaugccaCGGaGCGCGGCa -3' miRNA: 3'- -CUCGUugGGGUgaag--GCUgCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 96590 | 0.66 | 0.854511 |
Target: 5'- gGAGC-ACCCUGCUagCCaGCGCgGCGGCc -3' miRNA: 3'- -CUCGuUGGGGUGAa-GGcUGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 95185 | 0.69 | 0.70607 |
Target: 5'- uGAGCGguuguaacuGCCCgGCUgCCGACGgGCuGCu -3' miRNA: 3'- -CUCGU---------UGGGgUGAaGGCUGCgCGuUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 90699 | 0.71 | 0.623124 |
Target: 5'- cGAGCGcUgCCACUaUCCGACGCuGCAGu -3' miRNA: 3'- -CUCGUuGgGGUGA-AGGCUGCG-CGUUg -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 90560 | 0.72 | 0.560942 |
Target: 5'- uGGCAGCgCUCGCcgCCGA-GCGCAGCg -3' miRNA: 3'- cUCGUUG-GGGUGaaGGCUgCGCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 88853 | 0.66 | 0.877406 |
Target: 5'- gGAGCGcacGCgCCGCUUgCuGCGCgGCGACa -3' miRNA: 3'- -CUCGU---UGgGGUGAAgGcUGCG-CGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 88348 | 0.69 | 0.70607 |
Target: 5'- cGGCAACCCCAUUaUCGAagucauuCGCAACa -3' miRNA: 3'- cUCGUUGGGGUGAaGGCUgc-----GCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 85592 | 0.69 | 0.70607 |
Target: 5'- uGGCGACCCUGCUg-CGugG-GCGACg -3' miRNA: 3'- cUCGUUGGGGUGAagGCugCgCGUUG- -5' |
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21311 | 3' | -55.8 | NC_004778.3 | + | 82744 | 0.67 | 0.803282 |
Target: 5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3' miRNA: 3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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