Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 33364 | 0.68 | 0.77538 |
|
Target: 5'- cGGGCGACgUCGCggaCGACGCGCc-- -3' miRNA: 3'- -CUCGUUGgGGUGaagGCUGCGCGuug -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 25705 | 0.7 | 0.675196 |
|
Target: 5'- -uGUAGuuCCGgUUCUGGCGCGCGAUg -3' miRNA: 3'- cuCGUUggGGUgAAGGCUGCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 17440 | 0.66 | 0.854511 |
|
Target: 5'- -uGCGGCCCCGCcguUUCaacugCGAaaucuCGCGCAGCc -3' miRNA: 3'- cuCGUUGGGGUG---AAG-----GCU-----GCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 16507 | 0.67 | 0.803282 |
|
Target: 5'- uAGCGcACCCCugU--UGACGCGCAc- -3' miRNA: 3'- cUCGU-UGGGGugAagGCUGCGCGUug -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 10433 | 0.66 | 0.869994 |
|
Target: 5'- cGAGCGccuuugcaauGCgCCGCcggUCCcGCGCGCAAUc -3' miRNA: 3'- -CUCGU----------UGgGGUGa--AGGcUGCGCGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 6838 | 0.67 | 0.846453 |
|
Target: 5'- cGGGCGcCCCCugUgUgGACGCagGCGGCg -3' miRNA: 3'- -CUCGUuGGGGugAaGgCUGCG--CGUUG- -5' |
|||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 5815 | 0.71 | 0.581539 |
|
Target: 5'- aGAGCAGaUCgGCUUCCG-CGCGCAGa -3' miRNA: 3'- -CUCGUUgGGgUGAAGGCuGCGCGUUg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home