miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 3' -55.8 NC_004778.3 + 17440 0.66 0.854511
Target:  5'- -uGCGGCCCCGCcguUUCaacugCGAaaucuCGCGCAGCc -3'
miRNA:   3'- cuCGUUGGGGUG---AAG-----GCU-----GCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 82744 0.67 0.803282
Target:  5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3'
miRNA:   3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 49836 0.67 0.812273
Target:  5'- aAGCAcuggGCCCCGCa-CgGGCGCGCuuGCg -3'
miRNA:   3'- cUCGU----UGGGGUGaaGgCUGCGCGu-UG- -5'
21311 3' -55.8 NC_004778.3 + 81730 0.67 0.812273
Target:  5'- uAGCGGCgCCUGCgauaUCCGGCGCGgCGGg -3'
miRNA:   3'- cUCGUUG-GGGUGa---AGGCUGCGC-GUUg -5'
21311 3' -55.8 NC_004778.3 + 43097 0.67 0.82022
Target:  5'- -cGCGGCCUUACUaCCGGCggcugcuGCGCAAg -3'
miRNA:   3'- cuCGUUGGGGUGAaGGCUG-------CGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 115479 0.67 0.828023
Target:  5'- --aCGGCCaCCACUcacgccaaaugcCCGGCGUGCAGCa -3'
miRNA:   3'- cucGUUGG-GGUGAa-----------GGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 53124 0.67 0.837355
Target:  5'- cAGCAACCgccgccacagcaaCCGCcgCCGGCGUuaguGCAACa -3'
miRNA:   3'- cUCGUUGG-------------GGUGaaGGCUGCG----CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 6838 0.67 0.846453
Target:  5'- cGGGCGcCCCCugUgUgGACGCagGCGGCg -3'
miRNA:   3'- -CUCGUuGGGGugAaGgCUGCG--CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 96590 0.66 0.854511
Target:  5'- gGAGC-ACCCUGCUagCCaGCGCgGCGGCc -3'
miRNA:   3'- -CUCGuUGGGGUGAa-GGcUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 117181 0.68 0.791355
Target:  5'- gGAGCcACCCCGCaaaugggcuUUCCGcugaauacaacgauGCGCGCuAACc -3'
miRNA:   3'- -CUCGuUGGGGUG---------AAGGC--------------UGCGCG-UUG- -5'
21311 3' -55.8 NC_004778.3 + 47953 0.68 0.778229
Target:  5'- aGGGCAGCgCCGCUUUguucgaaagcacgCGccaguacgcgcgcacGCGCGCAACa -3'
miRNA:   3'- -CUCGUUGgGGUGAAG-------------GC---------------UGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 33364 0.68 0.77538
Target:  5'- cGGGCGACgUCGCggaCGACGCGCc-- -3'
miRNA:   3'- -CUCGUUGgGGUGaagGCUGCGCGuug -5'
21311 3' -55.8 NC_004778.3 + 73459 0.75 0.389819
Target:  5'- -cGCGGCgCCACUgUCCGA-GCGCGACa -3'
miRNA:   3'- cuCGUUGgGGUGA-AGGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 38071 0.72 0.530449
Target:  5'- uGAGUcaAAUgCCGCUgcggCgCGACGCGCAACa -3'
miRNA:   3'- -CUCG--UUGgGGUGAa---G-GCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 90560 0.72 0.560942
Target:  5'- uGGCAGCgCUCGCcgCCGA-GCGCAGCg -3'
miRNA:   3'- cUCGUUG-GGGUGaaGGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 70012 0.72 0.571218
Target:  5'- cAGCGACgCCA-UUCUGGCGCGCAu- -3'
miRNA:   3'- cUCGUUGgGGUgAAGGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 95185 0.69 0.70607
Target:  5'- uGAGCGguuguaacuGCCCgGCUgCCGACGgGCuGCu -3'
miRNA:   3'- -CUCGU---------UGGGgUGAaGGCUGCgCGuUG- -5'
21311 3' -55.8 NC_004778.3 + 36695 0.69 0.73636
Target:  5'- uGGGCAACaCCgCGCUcgCCaaGACGCGCAc- -3'
miRNA:   3'- -CUCGUUG-GG-GUGAa-GG--CUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 106312 0.68 0.746281
Target:  5'- -cGCAGCCCCAgccCCGguuugauuGCGCGCAAa -3'
miRNA:   3'- cuCGUUGGGGUgaaGGC--------UGCGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 98829 0.68 0.765801
Target:  5'- uGAGCAugCCCAaugccaCGGaGCGCGGCa -3'
miRNA:   3'- -CUCGUugGGGUgaag--GCUgCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.