Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21311 | 3' | -55.8 | NC_004778.3 | + | 10433 | 0.66 | 0.869994 |
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Target: 5'- cGAGCGccuuugcaauGCgCCGCcggUCCcGCGCGCAAUc -3' miRNA: 3'- -CUCGU----------UGgGGUGa--AGGcUGCGCGUUG- -5' |
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| 21311 | 3' | -55.8 | NC_004778.3 | + | 121579 | 0.66 | 0.86236 |
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Target: 5'- cGGCGGCgaCACggCCGACGCGUg-- -3' miRNA: 3'- cUCGUUGggGUGaaGGCUGCGCGuug -5' |
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| 21311 | 3' | -55.8 | NC_004778.3 | + | 114047 | 0.66 | 0.854511 |
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Target: 5'- -cGCGGCgCCGCcuucgcCCGACGCGCccGGCc -3' miRNA: 3'- cuCGUUGgGGUGaa----GGCUGCGCG--UUG- -5' |
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| 21311 | 3' | -55.8 | NC_004778.3 | + | 16507 | 0.67 | 0.803282 |
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Target: 5'- uAGCGcACCCCugU--UGACGCGCAc- -3' miRNA: 3'- cUCGU-UGGGGugAagGCUGCGCGUug -5' |
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| 21311 | 3' | -55.8 | NC_004778.3 | + | 56627 | 0.68 | 0.784827 |
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Target: 5'- -cGCAACCuCCACUucgUCCGA-GCuCAACa -3' miRNA: 3'- cuCGUUGG-GGUGA---AGGCUgCGcGUUG- -5' |
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| 21311 | 3' | -55.8 | NC_004778.3 | + | 114518 | 0.68 | 0.765801 |
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Target: 5'- aGGGcCGGCCUCGCccgCGGCGCGCAGg -3' miRNA: 3'- -CUC-GUUGGGGUGaagGCUGCGCGUUg -5' |
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| 21311 | 3' | -55.8 | NC_004778.3 | + | 39092 | 0.75 | 0.398431 |
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Target: 5'- cGGCGACCaCGCcgaUCCGcACGCGCAGCg -3' miRNA: 3'- cUCGUUGGgGUGa--AGGC-UGCGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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