miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 3' -55.8 NC_004778.3 + 38509 0.66 0.884589
Target:  5'- uGGCAAUgCgCGCUagCG-CGCGCGACg -3'
miRNA:   3'- cUCGUUGgG-GUGAagGCuGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 114222 0.72 0.550718
Target:  5'- aAGaCAugCUCACUUUCGGcCGCGCGGCc -3'
miRNA:   3'- cUC-GUugGGGUGAAGGCU-GCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 121403 0.74 0.461968
Target:  5'- aGAGCGACCCCGCcgcagaccCCGACuCGCcGCa -3'
miRNA:   3'- -CUCGUUGGGGUGaa------GGCUGcGCGuUG- -5'
21311 3' -55.8 NC_004778.3 + 39092 0.75 0.398431
Target:  5'- cGGCGACCaCGCcgaUCCGcACGCGCAGCg -3'
miRNA:   3'- cUCGUUGGgGUGa--AGGC-UGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 121579 0.66 0.86236
Target:  5'- cGGCGGCgaCACggCCGACGCGUg-- -3'
miRNA:   3'- cUCGUUGggGUGaaGGCUGCGCGuug -5'
21311 3' -55.8 NC_004778.3 + 114047 0.66 0.854511
Target:  5'- -cGCGGCgCCGCcuucgcCCGACGCGCccGGCc -3'
miRNA:   3'- cuCGUUGgGGUGaa----GGCUGCGCG--UUG- -5'
21311 3' -55.8 NC_004778.3 + 56627 0.68 0.784827
Target:  5'- -cGCAACCuCCACUucgUCCGA-GCuCAACa -3'
miRNA:   3'- cuCGUUGG-GGUGA---AGGCUgCGcGUUG- -5'
21311 3' -55.8 NC_004778.3 + 114518 0.68 0.765801
Target:  5'- aGGGcCGGCCUCGCccgCGGCGCGCAGg -3'
miRNA:   3'- -CUC-GUUGGGGUGaagGCUGCGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 107922 0.69 0.70607
Target:  5'- -cGCGACgCCGC--CCGACgaGCGCGACg -3'
miRNA:   3'- cuCGUUGgGGUGaaGGCUG--CGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 5815 0.71 0.581539
Target:  5'- aGAGCAGaUCgGCUUCCG-CGCGCAGa -3'
miRNA:   3'- -CUCGUUgGGgUGAAGGCuGCGCGUUg -5'
21311 3' -55.8 NC_004778.3 + 85592 0.69 0.70607
Target:  5'- uGGCGACCCUGCUg-CGugG-GCGACg -3'
miRNA:   3'- cUCGUUGGGGUGAagGCugCgCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 67227 0.69 0.726345
Target:  5'- gGAGUcGCUCCA--UCCGAUGCGCGu- -3'
miRNA:   3'- -CUCGuUGGGGUgaAGGCUGCGCGUug -5'
21311 3' -55.8 NC_004778.3 + 60654 0.66 0.884589
Target:  5'- cGGGCAugCgCAUcaaCGAgGCGCGGCa -3'
miRNA:   3'- -CUCGUugGgGUGaagGCUgCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 25705 0.7 0.675196
Target:  5'- -uGUAGuuCCGgUUCUGGCGCGCGAUg -3'
miRNA:   3'- cuCGUUggGGUgAAGGCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 88853 0.66 0.877406
Target:  5'- gGAGCGcacGCgCCGCUUgCuGCGCgGCGACa -3'
miRNA:   3'- -CUCGU---UGgGGUGAAgGcUGCG-CGUUG- -5'
21311 3' -55.8 NC_004778.3 + 41218 0.69 0.73636
Target:  5'- uGGGC-ACCgCGCUg--GACGCGCGACu -3'
miRNA:   3'- -CUCGuUGGgGUGAaggCUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 90699 0.71 0.623124
Target:  5'- cGAGCGcUgCCACUaUCCGACGCuGCAGu -3'
miRNA:   3'- -CUCGUuGgGGUGA-AGGCUGCG-CGUUg -5'
21311 3' -55.8 NC_004778.3 + 107839 0.72 0.540552
Target:  5'- uGGCGGCCuCCACgcgcaaggUUUCGuCGCGCGACa -3'
miRNA:   3'- cUCGUUGG-GGUG--------AAGGCuGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 10433 0.66 0.869994
Target:  5'- cGAGCGccuuugcaauGCgCCGCcggUCCcGCGCGCAAUc -3'
miRNA:   3'- -CUCGU----------UGgGGUGa--AGGcUGCGCGUUG- -5'
21311 3' -55.8 NC_004778.3 + 16507 0.67 0.803282
Target:  5'- uAGCGcACCCCugU--UGACGCGCAc- -3'
miRNA:   3'- cUCGU-UGGGGugAagGCUGCGCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.