Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 5815 | 0.71 | 0.581539 |
Target: 5'- aGAGCAGaUCgGCUUCCG-CGCGCAGa -3' miRNA: 3'- -CUCGUUgGGgUGAAGGCuGCGCGUUg -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 39607 | 0.66 | 0.877406 |
Target: 5'- -cGCuGACCgCCACggacagUCCGGCGgGCAc- -3' miRNA: 3'- cuCG-UUGG-GGUGa-----AGGCUGCgCGUug -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 95185 | 0.69 | 0.70607 |
Target: 5'- uGAGCGguuguaacuGCCCgGCUgCCGACGgGCuGCu -3' miRNA: 3'- -CUCGU---------UGGGgUGAaGGCUGCgCGuUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 43847 | 0.66 | 0.86236 |
Target: 5'- -cGCGGCCg----UCCGACGCgGCAACa -3' miRNA: 3'- cuCGUUGGggugaAGGCUGCG-CGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 120971 | 0.66 | 0.86236 |
Target: 5'- cGGGCcGCgCCCGCUgccCCGGCGcCGCc-- -3' miRNA: 3'- -CUCGuUG-GGGUGAa--GGCUGC-GCGuug -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 70012 | 0.72 | 0.571218 |
Target: 5'- cAGCGACgCCA-UUCUGGCGCGCAu- -3' miRNA: 3'- cUCGUUGgGGUgAAGGCUGCGCGUug -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 36695 | 0.69 | 0.73636 |
Target: 5'- uGGGCAACaCCgCGCUcgCCaaGACGCGCAc- -3' miRNA: 3'- -CUCGUUG-GG-GUGAa-GG--CUGCGCGUug -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 98829 | 0.68 | 0.765801 |
Target: 5'- uGAGCAugCCCAaugccaCGGaGCGCGGCa -3' miRNA: 3'- -CUCGUugGGGUgaag--GCUgCGCGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 33364 | 0.68 | 0.77538 |
Target: 5'- cGGGCGACgUCGCggaCGACGCGCc-- -3' miRNA: 3'- -CUCGUUGgGGUGaagGCUGCGCGuug -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 47953 | 0.68 | 0.778229 |
Target: 5'- aGGGCAGCgCCGCUUUguucgaaagcacgCGccaguacgcgcgcacGCGCGCAACa -3' miRNA: 3'- -CUCGUUGgGGUGAAG-------------GC---------------UGCGCGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 117181 | 0.68 | 0.791355 |
Target: 5'- gGAGCcACCCCGCaaaugggcuUUCCGcugaauacaacgauGCGCGCuAACc -3' miRNA: 3'- -CUCGuUGGGGUG---------AAGGC--------------UGCGCG-UUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 82744 | 0.67 | 0.803282 |
Target: 5'- cGGUccCCCCGCcgcgaaUUCCGACGCcgaaGCGGCg -3' miRNA: 3'- cUCGuuGGGGUG------AAGGCUGCG----CGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 49836 | 0.67 | 0.812273 |
Target: 5'- aAGCAcuggGCCCCGCa-CgGGCGCGCuuGCg -3' miRNA: 3'- cUCGU----UGGGGUGaaGgCUGCGCGu-UG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 81730 | 0.67 | 0.812273 |
Target: 5'- uAGCGGCgCCUGCgauaUCCGGCGCGgCGGg -3' miRNA: 3'- cUCGUUG-GGGUGa---AGGCUGCGC-GUUg -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 53124 | 0.67 | 0.837355 |
Target: 5'- cAGCAACCgccgccacagcaaCCGCcgCCGGCGUuaguGCAACa -3' miRNA: 3'- cUCGUUGG-------------GGUGaaGGCUGCG----CGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 6838 | 0.67 | 0.846453 |
Target: 5'- cGGGCGcCCCCugUgUgGACGCagGCGGCg -3' miRNA: 3'- -CUCGUuGGGGugAaGgCUGCG--CGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 96590 | 0.66 | 0.854511 |
Target: 5'- gGAGC-ACCCUGCUagCCaGCGCgGCGGCc -3' miRNA: 3'- -CUCGuUGGGGUGAa-GGcUGCG-CGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 17440 | 0.66 | 0.854511 |
Target: 5'- -uGCGGCCCCGCcguUUCaacugCGAaaucuCGCGCAGCc -3' miRNA: 3'- cuCGUUGGGGUG---AAG-----GCU-----GCGCGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 53034 | 0.66 | 0.86236 |
Target: 5'- cAGCAACCgCCGCcacagcaaCCGcCGCcGCAGCa -3' miRNA: 3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5' |
|||||||
21311 | 3' | -55.8 | NC_004778.3 | + | 53079 | 0.66 | 0.86236 |
Target: 5'- cAGCAACCgCCGCcgcagcaaCCGcCGCcGCAGCa -3' miRNA: 3'- cUCGUUGG-GGUGaa------GGCuGCG-CGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home