miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 5' -56.3 NC_004778.3 + 71468 0.66 0.866242
Target:  5'- gGGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 71420 0.66 0.866242
Target:  5'- gGGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 71372 0.66 0.866242
Target:  5'- gAGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 45672 0.66 0.866242
Target:  5'- aCAGCUGC--UUgGcGCGGC-GCGGCa -3'
miRNA:   3'- -GUCGACGuuAAgCaCGCCGcCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 14455 0.66 0.858518
Target:  5'- cCAGCUGCGGcgaaaCGUGuUGGUGGCcACg -3'
miRNA:   3'- -GUCGACGUUaa---GCAC-GCCGCCGcUGa -5'
21311 5' -56.3 NC_004778.3 + 85546 0.66 0.858518
Target:  5'- aCGGCgucgcccacGCGgg-CGUuuGCGGCGGCGAUg -3'
miRNA:   3'- -GUCGa--------CGUuaaGCA--CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 120531 0.66 0.850582
Target:  5'- -uGCUGCAGUUCGga-GGCGucaaCGACg -3'
miRNA:   3'- guCGACGUUAAGCacgCCGCc---GCUGa -5'
21311 5' -56.3 NC_004778.3 + 59276 0.66 0.850582
Target:  5'- -cGC-GCAc--CGUGCGGCGauGCGGCUg -3'
miRNA:   3'- guCGaCGUuaaGCACGCCGC--CGCUGA- -5'
21311 5' -56.3 NC_004778.3 + 38900 0.66 0.850582
Target:  5'- gAGcCUGCAGUggaUGC-GCGGCGGCUc -3'
miRNA:   3'- gUC-GACGUUAagcACGcCGCCGCUGA- -5'
21311 5' -56.3 NC_004778.3 + 2195 0.66 0.850582
Target:  5'- gCGGCUGCg------GUGGCGGcCGACUa -3'
miRNA:   3'- -GUCGACGuuaagcaCGCCGCC-GCUGA- -5'
21311 5' -56.3 NC_004778.3 + 96484 0.66 0.834102
Target:  5'- -uGCUGCAAUuuUCGcuCGGCGGCGu-- -3'
miRNA:   3'- guCGACGUUA--AGCacGCCGCCGCuga -5'
21311 5' -56.3 NC_004778.3 + 52221 0.66 0.825573
Target:  5'- -uGUUGCGAcaUCGcUGCGcGCGGCGAa- -3'
miRNA:   3'- guCGACGUUa-AGC-ACGC-CGCCGCUga -5'
21311 5' -56.3 NC_004778.3 + 15581 0.66 0.825573
Target:  5'- -cGCUGCGAgcaGUGCuuugauaucGGCGGCGcCa -3'
miRNA:   3'- guCGACGUUaagCACG---------CCGCCGCuGa -5'
21311 5' -56.3 NC_004778.3 + 39124 0.66 0.825573
Target:  5'- gAGCggauugaacGCAAguaCGUggugcGCGGCGGCGACc -3'
miRNA:   3'- gUCGa--------CGUUaa-GCA-----CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 34921 0.67 0.798928
Target:  5'- aAGCgcaugGCA--UUGUGC-GCGGCGGCg -3'
miRNA:   3'- gUCGa----CGUuaAGCACGcCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 58272 0.67 0.798928
Target:  5'- uCGGC-GCGuuuaacUCGUggggcucgaggcGCGGCGGCGGCa -3'
miRNA:   3'- -GUCGaCGUua----AGCA------------CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 25862 0.67 0.789722
Target:  5'- aAGCgcugUGCAuugccUCGUGCGcGaCGGCGGCg -3'
miRNA:   3'- gUCG----ACGUua---AGCACGC-C-GCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 90540 0.67 0.789722
Target:  5'- aCAGCUGCAGcgUCGgauaGUGGCaGCG-CUc -3'
miRNA:   3'- -GUCGACGUUa-AGCa---CGCCGcCGCuGA- -5'
21311 5' -56.3 NC_004778.3 + 48692 0.67 0.788793
Target:  5'- -uGcCUGCGGUuucuguuaUCGUGCGuguuguaguagccGCGGCGACg -3'
miRNA:   3'- guC-GACGUUA--------AGCACGC-------------CGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 34524 0.67 0.78319
Target:  5'- -uGCUGCuuauguccaucaaGUGCGGCGGCguggGACUg -3'
miRNA:   3'- guCGACGuuaag--------CACGCCGCCG----CUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.