Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21311 | 5' | -56.3 | NC_004778.3 | + | 101235 | 0.68 | 0.76126 |
Target: 5'- -uGUUGUAcggGUUCauacccauuUGCGGCGGCGACg -3' miRNA: 3'- guCGACGU---UAAGc--------ACGCCGCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 53177 | 0.68 | 0.741678 |
Target: 5'- uGGCgGCGGUUgcUGUGGCGGCGGu- -3' miRNA: 3'- gUCGaCGUUAAgcACGCCGCCGCUga -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 85453 | 0.68 | 0.741678 |
Target: 5'- nCGGCauggacGCGgg-CGUuuGCGGCGGCGACg -3' miRNA: 3'- -GUCGa-----CGUuaaGCA--CGCCGCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 21664 | 0.68 | 0.741678 |
Target: 5'- -cGCUuaGGuUUCGgccgGCGGUGGCGGCg -3' miRNA: 3'- guCGAcgUU-AAGCa---CGCCGCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 70139 | 0.68 | 0.731734 |
Target: 5'- cCAGUUGCAggUUuUGCGGCgGGCGcGCg -3' miRNA: 3'- -GUCGACGUuaAGcACGCCG-CCGC-UGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 27861 | 0.68 | 0.7217 |
Target: 5'- uGGCgUGCGuauggcaaGUUUGUacGCGGCGGCGAgUg -3' miRNA: 3'- gUCG-ACGU--------UAAGCA--CGCCGCCGCUgA- -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 63488 | 0.68 | 0.7217 |
Target: 5'- uCGGCgcggGCgGAUUCGggcucaugcUGCGGCGGCGcCa -3' miRNA: 3'- -GUCGa---CG-UUAAGC---------ACGCCGCCGCuGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 97384 | 0.69 | 0.701403 |
Target: 5'- -uGCUGaccgccaUCGUGUGGCGGCGcGCa -3' miRNA: 3'- guCGACguua---AGCACGCCGCCGC-UGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 88744 | 0.69 | 0.680865 |
Target: 5'- aGGCUGuCGAUcucuUCGUGCGGCaGGuUGAUUa -3' miRNA: 3'- gUCGAC-GUUA----AGCACGCCG-CC-GCUGA- -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 57932 | 0.69 | 0.680865 |
Target: 5'- gCAGCUGUcggAAUaCGUGUGGCGcuuggcGCGGCg -3' miRNA: 3'- -GUCGACG---UUAaGCACGCCGC------CGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 9553 | 0.69 | 0.670529 |
Target: 5'- -uGCUGCAGUUUGcGCGcGUGGUGAa- -3' miRNA: 3'- guCGACGUUAAGCaCGC-CGCCGCUga -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 53283 | 0.69 | 0.66016 |
Target: 5'- cCGGCgGCGGUUgcUGUGGCGGCGGu- -3' miRNA: 3'- -GUCGaCGUUAAgcACGCCGCCGCUga -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 56125 | 0.69 | 0.66016 |
Target: 5'- ---aUGCAGgaCGUG-GGCGGCGACa -3' miRNA: 3'- gucgACGUUaaGCACgCCGCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 121609 | 0.71 | 0.587407 |
Target: 5'- uGGCgGCAGUUacuaUGUGCgcggcgccgacGGCGGCGACa -3' miRNA: 3'- gUCGaCGUUAA----GCACG-----------CCGCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 93160 | 0.72 | 0.516244 |
Target: 5'- gGGCUGCugcgCGUucacGCGGcCGGCGGCg -3' miRNA: 3'- gUCGACGuuaaGCA----CGCC-GCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 53238 | 0.73 | 0.47714 |
Target: 5'- gCGGCgGCGGUUgcUGCGGCGGCGGu- -3' miRNA: 3'- -GUCGaCGUUAAgcACGCCGCCGCUga -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 53208 | 0.73 | 0.47714 |
Target: 5'- gCGGCgGCGGUUgcUGCGGCGGCGGu- -3' miRNA: 3'- -GUCGaCGUUAAgcACGCCGCCGCUga -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 58347 | 0.73 | 0.47714 |
Target: 5'- uGGCgaaGCAcacuuugcAUUCGgacacgGCGGCGGCGGCg -3' miRNA: 3'- gUCGa--CGU--------UAAGCa-----CGCCGCCGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 47363 | 0.74 | 0.412508 |
Target: 5'- -cGCUGCAcagCGUGCGGCGuuauuuugggcGCGACg -3' miRNA: 3'- guCGACGUuaaGCACGCCGC-----------CGCUGa -5' |
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21311 | 5' | -56.3 | NC_004778.3 | + | 85492 | 0.75 | 0.381443 |
Target: 5'- gCGGCgGCGAUgucauggacgcgggCGUuuGCGGCGGCGACg -3' miRNA: 3'- -GUCGaCGUUAa-------------GCA--CGCCGCCGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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