miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 5' -56.3 NC_004778.3 + 56125 0.69 0.66016
Target:  5'- ---aUGCAGgaCGUG-GGCGGCGACa -3'
miRNA:   3'- gucgACGUUaaGCACgCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 57932 0.69 0.680865
Target:  5'- gCAGCUGUcggAAUaCGUGUGGCGcuuggcGCGGCg -3'
miRNA:   3'- -GUCGACG---UUAaGCACGCCGC------CGCUGa -5'
21311 5' -56.3 NC_004778.3 + 58272 0.67 0.798928
Target:  5'- uCGGC-GCGuuuaacUCGUggggcucgaggcGCGGCGGCGGCa -3'
miRNA:   3'- -GUCGaCGUua----AGCA------------CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 58347 0.73 0.47714
Target:  5'- uGGCgaaGCAcacuuugcAUUCGgacacgGCGGCGGCGGCg -3'
miRNA:   3'- gUCGa--CGU--------UAAGCa-----CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 59276 0.66 0.850582
Target:  5'- -cGC-GCAc--CGUGCGGCGauGCGGCUg -3'
miRNA:   3'- guCGaCGUuaaGCACGCCGC--CGCUGA- -5'
21311 5' -56.3 NC_004778.3 + 63488 0.68 0.7217
Target:  5'- uCGGCgcggGCgGAUUCGggcucaugcUGCGGCGGCGcCa -3'
miRNA:   3'- -GUCGa---CG-UUAAGC---------ACGCCGCCGCuGa -5'
21311 5' -56.3 NC_004778.3 + 68611 0.76 0.315261
Target:  5'- cCGGCgGCGGcggCGgcgGCGGCGGCGGCg -3'
miRNA:   3'- -GUCGaCGUUaa-GCa--CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 70139 0.68 0.731734
Target:  5'- cCAGUUGCAggUUuUGCGGCgGGCGcGCg -3'
miRNA:   3'- -GUCGACGUuaAGcACGCCG-CCGC-UGa -5'
21311 5' -56.3 NC_004778.3 + 71372 0.66 0.866242
Target:  5'- gAGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 71420 0.66 0.866242
Target:  5'- gGGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 71468 0.66 0.866242
Target:  5'- gGGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 85453 0.68 0.741678
Target:  5'- nCGGCauggacGCGgg-CGUuuGCGGCGGCGACg -3'
miRNA:   3'- -GUCGa-----CGUuaaGCA--CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 85492 0.75 0.381443
Target:  5'- gCGGCgGCGAUgucauggacgcgggCGUuuGCGGCGGCGACg -3'
miRNA:   3'- -GUCGaCGUUAa-------------GCA--CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 85546 0.66 0.858518
Target:  5'- aCGGCgucgcccacGCGgg-CGUuuGCGGCGGCGAUg -3'
miRNA:   3'- -GUCGa--------CGUuaaGCA--CGCCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 88744 0.69 0.680865
Target:  5'- aGGCUGuCGAUcucuUCGUGCGGCaGGuUGAUUa -3'
miRNA:   3'- gUCGAC-GUUA----AGCACGCCG-CC-GCUGA- -5'
21311 5' -56.3 NC_004778.3 + 90540 0.67 0.789722
Target:  5'- aCAGCUGCAGcgUCGgauaGUGGCaGCG-CUc -3'
miRNA:   3'- -GUCGACGUUa-AGCa---CGCCGcCGCuGA- -5'
21311 5' -56.3 NC_004778.3 + 93160 0.72 0.516244
Target:  5'- gGGCUGCugcgCGUucacGCGGcCGGCGGCg -3'
miRNA:   3'- gUCGACGuuaaGCA----CGCC-GCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 96484 0.66 0.834102
Target:  5'- -uGCUGCAAUuuUCGcuCGGCGGCGu-- -3'
miRNA:   3'- guCGACGUUA--AGCacGCCGCCGCuga -5'
21311 5' -56.3 NC_004778.3 + 97384 0.69 0.701403
Target:  5'- -uGCUGaccgccaUCGUGUGGCGGCGcGCa -3'
miRNA:   3'- guCGACguua---AGCACGCCGCCGC-UGa -5'
21311 5' -56.3 NC_004778.3 + 101235 0.68 0.76126
Target:  5'- -uGUUGUAcggGUUCauacccauuUGCGGCGGCGACg -3'
miRNA:   3'- guCGACGU---UAAGc--------ACGCCGCCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.