miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21311 5' -56.3 NC_004778.3 + 41219 1.07 0.002826
Target:  5'- cCAGCUGCAAUUCGUGCGGCGGCGACUc -3'
miRNA:   3'- -GUCGACGUUAAGCACGCCGCCGCUGA- -5'
21311 5' -56.3 NC_004778.3 + 52221 0.66 0.825573
Target:  5'- -uGUUGCGAcaUCGcUGCGcGCGGCGAa- -3'
miRNA:   3'- guCGACGUUa-AGC-ACGC-CGCCGCUga -5'
21311 5' -56.3 NC_004778.3 + 96484 0.66 0.834102
Target:  5'- -uGCUGCAAUuuUCGcuCGGCGGCGu-- -3'
miRNA:   3'- guCGACGUUA--AGCacGCCGCCGCuga -5'
21311 5' -56.3 NC_004778.3 + 59276 0.66 0.850582
Target:  5'- -cGC-GCAc--CGUGCGGCGauGCGGCUg -3'
miRNA:   3'- guCGaCGUuaaGCACGCCGC--CGCUGA- -5'
21311 5' -56.3 NC_004778.3 + 120531 0.66 0.850582
Target:  5'- -uGCUGCAGUUCGga-GGCGucaaCGACg -3'
miRNA:   3'- guCGACGUUAAGCacgCCGCc---GCUGa -5'
21311 5' -56.3 NC_004778.3 + 45672 0.66 0.866242
Target:  5'- aCAGCUGC--UUgGcGCGGC-GCGGCa -3'
miRNA:   3'- -GUCGACGuuAAgCaCGCCGcCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 71372 0.66 0.866242
Target:  5'- gAGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 71420 0.66 0.866242
Target:  5'- gGGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 71468 0.66 0.866242
Target:  5'- gGGCguagGCGAgg-GUGuCGGCGGgGGCg -3'
miRNA:   3'- gUCGa---CGUUaagCAC-GCCGCCgCUGa -5'
21311 5' -56.3 NC_004778.3 + 34921 0.67 0.798928
Target:  5'- aAGCgcaugGCA--UUGUGC-GCGGCGGCg -3'
miRNA:   3'- gUCGa----CGUuaAGCACGcCGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 90540 0.67 0.789722
Target:  5'- aCAGCUGCAGcgUCGgauaGUGGCaGCG-CUc -3'
miRNA:   3'- -GUCGACGUUa-AGCa---CGCCGcCGCuGA- -5'
21311 5' -56.3 NC_004778.3 + 103133 0.77 0.260646
Target:  5'- gCAGUUGCucg-UGUGCGGCGGCGGgUg -3'
miRNA:   3'- -GUCGACGuuaaGCACGCCGCCGCUgA- -5'
21311 5' -56.3 NC_004778.3 + 47363 0.74 0.412508
Target:  5'- -cGCUGCAcagCGUGCGGCGuuauuuugggcGCGACg -3'
miRNA:   3'- guCGACGUuaaGCACGCCGC-----------CGCUGa -5'
21311 5' -56.3 NC_004778.3 + 88744 0.69 0.680865
Target:  5'- aGGCUGuCGAUcucuUCGUGCGGCaGGuUGAUUa -3'
miRNA:   3'- gUCGAC-GUUA----AGCACGCCG-CC-GCUGA- -5'
21311 5' -56.3 NC_004778.3 + 97384 0.69 0.701403
Target:  5'- -uGCUGaccgccaUCGUGUGGCGGCGcGCa -3'
miRNA:   3'- guCGACguua---AGCACGCCGCCGC-UGa -5'
21311 5' -56.3 NC_004778.3 + 27861 0.68 0.7217
Target:  5'- uGGCgUGCGuauggcaaGUUUGUacGCGGCGGCGAgUg -3'
miRNA:   3'- gUCG-ACGU--------UAAGCA--CGCCGCCGCUgA- -5'
21311 5' -56.3 NC_004778.3 + 63488 0.68 0.7217
Target:  5'- uCGGCgcggGCgGAUUCGggcucaugcUGCGGCGGCGcCa -3'
miRNA:   3'- -GUCGa---CG-UUAAGC---------ACGCCGCCGCuGa -5'
21311 5' -56.3 NC_004778.3 + 34524 0.67 0.78319
Target:  5'- -uGCUGCuuauguccaucaaGUGCGGCGGCguggGACUg -3'
miRNA:   3'- guCGACGuuaag--------CACGCCGCCG----CUGA- -5'
21311 5' -56.3 NC_004778.3 + 48692 0.67 0.788793
Target:  5'- -uGcCUGCGGUuucuguuaUCGUGCGuguuguaguagccGCGGCGACg -3'
miRNA:   3'- guC-GACGUUA--------AGCACGC-------------CGCCGCUGa -5'
21311 5' -56.3 NC_004778.3 + 68611 0.76 0.315261
Target:  5'- cCGGCgGCGGcggCGgcgGCGGCGGCGGCg -3'
miRNA:   3'- -GUCGaCGUUaa-GCa--CGCCGCCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.