miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21312 3' -47.8 NC_004778.3 + 35049 0.66 0.999494
Target:  5'- uGCGGuauaacgCCGCUGCcgAGGUCGacguGCGc -3'
miRNA:   3'- -CGCCuua----GGUGACG--UUCAGCaau-UGC- -5'
21312 3' -47.8 NC_004778.3 + 98054 0.66 0.999369
Target:  5'- gGCGGuugaaCCGCUGCc-GUCGaUGAUGg -3'
miRNA:   3'- -CGCCuua--GGUGACGuuCAGCaAUUGC- -5'
21312 3' -47.8 NC_004778.3 + 15592 0.66 0.999202
Target:  5'- cGCGGAGgcggCGCUGCGAGcagugcuuugauaUCGgcGGCGc -3'
miRNA:   3'- -CGCCUUag--GUGACGUUC-------------AGCaaUUGC- -5'
21312 3' -47.8 NC_004778.3 + 121604 0.68 0.996701
Target:  5'- cGCGGGuUCUGCUGCAGcgcgcgguccacgccGUCGgccgAGCGc -3'
miRNA:   3'- -CGCCUuAGGUGACGUU---------------CAGCaa--UUGC- -5'
21312 3' -47.8 NC_004778.3 + 45459 0.68 0.996471
Target:  5'- gGCGGAAcUCGCUGCcgcGGUCGggcAACu -3'
miRNA:   3'- -CGCCUUaGGUGACGu--UCAGCaa-UUGc -5'
21312 3' -47.8 NC_004778.3 + 60714 0.69 0.994301
Target:  5'- cGCGGAAUCUuaaACUcggGCAGGUUcaUGGCGu -3'
miRNA:   3'- -CGCCUUAGG---UGA---CGUUCAGcaAUUGC- -5'
21312 3' -47.8 NC_004778.3 + 36756 0.69 0.993375
Target:  5'- cGCGGAAaugaacaaccUCCAgUuCAAGUCGUgcACGc -3'
miRNA:   3'- -CGCCUU----------AGGUgAcGUUCAGCAauUGC- -5'
21312 3' -47.8 NC_004778.3 + 105607 0.7 0.983073
Target:  5'- cGCGGGAUcggCCGCUGCGugacCGUUAAgGg -3'
miRNA:   3'- -CGCCUUA---GGUGACGUuca-GCAAUUgC- -5'
21312 3' -47.8 NC_004778.3 + 4077 0.73 0.949275
Target:  5'- aGCGGGugcuuAUCCACUGCuacgcgggcgaguccAGGUCGgcGGCa -3'
miRNA:   3'- -CGCCU-----UAGGUGACG---------------UUCAGCaaUUGc -5'
21312 3' -47.8 NC_004778.3 + 8409 0.73 0.93778
Target:  5'- cGCGGuuugcgcGUCCGCUGCGAGUaaCGUcAAUGc -3'
miRNA:   3'- -CGCCu------UAGGUGACGUUCA--GCAaUUGC- -5'
21312 3' -47.8 NC_004778.3 + 45548 1.12 0.010956
Target:  5'- cGCGGAAUCCACUGCAAGUCGUUAACGc -3'
miRNA:   3'- -CGCCUUAGGUGACGUUCAGCAAUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.