miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 32299 0.67 0.996304
Target:  5'- ------aGugGCCGcggcgcauUGGAGCGCCgucgUGCa -3'
miRNA:   3'- uuuauaaCugCGGC--------AUCUUGCGG----ACG- -5'
21313 3' -48.4 NC_004778.3 + 18331 0.67 0.99564
Target:  5'- -cAUGUUGugGCUGUucacccuuuuAGGGCGCUUuGUg -3'
miRNA:   3'- uuUAUAACugCGGCA----------UCUUGCGGA-CG- -5'
21313 3' -48.4 NC_004778.3 + 99193 0.67 0.993047
Target:  5'- ---aAUUGugGgCGU-GAGCGCC-GCg -3'
miRNA:   3'- uuuaUAACugCgGCAuCUUGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 70355 0.67 0.995916
Target:  5'- ------gGGCGCCGUAGAuaauuuucugcucgcGCGCaaacuUGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAUCU---------------UGCGg----ACG- -5'
21313 3' -48.4 NC_004778.3 + 43137 0.67 0.994882
Target:  5'- ------cGGCGCCGcGGcGCGCC-GCa -3'
miRNA:   3'- uuuauaaCUGCGGCaUCuUGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 89128 0.67 0.993047
Target:  5'- ------aGACGCgCGUuu--CGCCUGCg -3'
miRNA:   3'- uuuauaaCUGCG-GCAucuuGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 21861 0.68 0.98782
Target:  5'- gAGGUAUaGACGCCGcgcauacggccAGAcaGCGUCUGCu -3'
miRNA:   3'- -UUUAUAaCUGCGGCa----------UCU--UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 49599 0.68 0.98782
Target:  5'- ------cGACagguaGCCGUGcGAGCGCaCUGCg -3'
miRNA:   3'- uuuauaaCUG-----CGGCAU-CUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 63852 0.69 0.98613
Target:  5'- ---gAUUGcuuCGCCGgaacuGGACGCgCUGCa -3'
miRNA:   3'- uuuaUAACu--GCGGCau---CUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 110337 0.69 0.984265
Target:  5'- -----gUGGCGCCGUcugcGAaaGCGCgUGCg -3'
miRNA:   3'- uuuauaACUGCGGCAu---CU--UGCGgACG- -5'
21313 3' -48.4 NC_004778.3 + 47668 0.69 0.979972
Target:  5'- cGGUGUUGGCGCCG-GGAaaaAUGCCcaGCc -3'
miRNA:   3'- uUUAUAACUGCGGCaUCU---UGCGGa-CG- -5'
21313 3' -48.4 NC_004778.3 + 66758 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucacuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 86477 0.69 0.979972
Target:  5'- ---aGUUG-UGUCGUAcuggagcgcguuGAACGCCUGCu -3'
miRNA:   3'- uuuaUAACuGCGGCAU------------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 30511 0.69 0.977525
Target:  5'- ---aAUUGAuCGCCGaaaaaucGAGCGCCUGg -3'
miRNA:   3'- uuuaUAACU-GCGGCau-----CUUGCGGACg -5'
21313 3' -48.4 NC_004778.3 + 66326 0.69 0.977525
Target:  5'- ------gGACGCCGUcguuAGAuuGCGUUUGCa -3'
miRNA:   3'- uuuauaaCUGCGGCA----UCU--UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 81718 0.69 0.977525
Target:  5'- -----aUGAcCGCUuaGUAGcGGCGCCUGCg -3'
miRNA:   3'- uuuauaACU-GCGG--CAUC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 105142 0.69 0.979972
Target:  5'- aGAAUug-GGCGCCGcGGcGCGCUUGUu -3'
miRNA:   3'- -UUUAuaaCUGCGGCaUCuUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 66692 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucgcuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 78056 0.69 0.98613
Target:  5'- cGGAUGUgcACGCUGUGGAguagACGCCcGUg -3'
miRNA:   3'- -UUUAUAacUGCGGCAUCU----UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 8623 0.7 0.971679
Target:  5'- ----uUUGACGCCGUGGugguggaAGCGUCcGCc -3'
miRNA:   3'- uuuauAACUGCGGCAUC-------UUGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.