miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 121302 0.7 0.968865
Target:  5'- ---aGUUGAaccCGCUGcAGAugGCUUGCa -3'
miRNA:   3'- uuuaUAACU---GCGGCaUCUugCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 124462 0.7 0.965512
Target:  5'- ------aGACGCCGUGcccACGCCgGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAUcu-UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 28172 0.71 0.944931
Target:  5'- ------cGcCGCCGUuGAGCGCCaUGCg -3'
miRNA:   3'- uuuauaaCuGCGGCAuCUUGCGG-ACG- -5'
21313 3' -48.4 NC_004778.3 + 96526 0.71 0.940017
Target:  5'- ------gGGCGCaaaaugGGAGCGCCUGCc -3'
miRNA:   3'- uuuauaaCUGCGgca---UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 20208 0.71 0.940017
Target:  5'- uAGUcgUGGCGaCUGUGGccuccuuguGCGCCUGCc -3'
miRNA:   3'- uUUAuaACUGC-GGCAUCu--------UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 121767 0.72 0.923623
Target:  5'- ------cGACGgCGUGGAccGCGCgCUGCa -3'
miRNA:   3'- uuuauaaCUGCgGCAUCU--UGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 4041 0.72 0.922442
Target:  5'- uGAAUGUguuCGCCGgcgggcaggccGAGCGCCUGCc -3'
miRNA:   3'- -UUUAUAacuGCGGCau---------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 8745 0.72 0.917605
Target:  5'- ------cGGCGCCGUGGcGCGCCa-- -3'
miRNA:   3'- uuuauaaCUGCGGCAUCuUGCGGacg -5'
21313 3' -48.4 NC_004778.3 + 43273 0.74 0.859808
Target:  5'- ------cGGCGCCGUcGaAGCGCUUGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAuC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 129145 0.77 0.69311
Target:  5'- -----cUGACGCCGUGGAAUuGCCgGCc -3'
miRNA:   3'- uuuauaACUGCGGCAUCUUG-CGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 47696 1.1 0.009786
Target:  5'- aAAAUAUUGACGCCGUAGAACGCCUGCu -3'
miRNA:   3'- -UUUAUAACUGCGGCAUCUUGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.