miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 49599 0.68 0.98782
Target:  5'- ------cGACagguaGCCGUGcGAGCGCaCUGCg -3'
miRNA:   3'- uuuauaaCUG-----CGGCAU-CUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 56466 0.66 0.998474
Target:  5'- cAAGUGUUgagcucgGACGaaGUGGAgguuGCGCCUGa -3'
miRNA:   3'- -UUUAUAA-------CUGCggCAUCU----UGCGGACg -5'
21313 3' -48.4 NC_004778.3 + 57998 0.66 0.997383
Target:  5'- ---aGUUGACGCUGcgcaacGAGCGCaUGCc -3'
miRNA:   3'- uuuaUAACUGCGGCau----CUUGCGgACG- -5'
21313 3' -48.4 NC_004778.3 + 60346 0.66 0.997816
Target:  5'- ---gGUUG-CGCgCGUAGAuuucgcGCGCCaGCu -3'
miRNA:   3'- uuuaUAACuGCG-GCAUCU------UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 61788 0.66 0.997775
Target:  5'- ---cGUUGGCGCgCGcUGGcugcgcggcgccaAACGCUUGCa -3'
miRNA:   3'- uuuaUAACUGCG-GC-AUC-------------UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 62020 0.66 0.996882
Target:  5'- aAGAUGUcugcgGACGCCG-AGAgcgGCGCCa-- -3'
miRNA:   3'- -UUUAUAa----CUGCGGCaUCU---UGCGGacg -5'
21313 3' -48.4 NC_004778.3 + 63852 0.69 0.98613
Target:  5'- ---gAUUGcuuCGCCGgaacuGGACGCgCUGCa -3'
miRNA:   3'- uuuaUAACu--GCGGCau---CUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 66326 0.69 0.977525
Target:  5'- ------gGACGCCGUcguuAGAuuGCGUUUGCa -3'
miRNA:   3'- uuuauaaCUGCGGCA----UCU--UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 66692 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucgcuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 66758 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucacuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 70211 0.67 0.996304
Target:  5'- ---gGUUGGCGCCGguGGGCGCagGCc -3'
miRNA:   3'- uuuaUAACUGCGGCauCUUGCGgaCG- -5'
21313 3' -48.4 NC_004778.3 + 70355 0.67 0.995916
Target:  5'- ------gGGCGCCGUAGAuaauuuucugcucgcGCGCaaacuUGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAUCU---------------UGCGg----ACG- -5'
21313 3' -48.4 NC_004778.3 + 78056 0.69 0.98613
Target:  5'- cGGAUGUgcACGCUGUGGAguagACGCCcGUg -3'
miRNA:   3'- -UUUAUAacUGCGGCAUCU----UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 81718 0.69 0.977525
Target:  5'- -----aUGAcCGCUuaGUAGcGGCGCCUGCg -3'
miRNA:   3'- uuuauaACU-GCGG--CAUC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 86477 0.69 0.979972
Target:  5'- ---aGUUG-UGUCGUAcuggagcgcguuGAACGCCUGCu -3'
miRNA:   3'- uuuaUAACuGCGGCAU------------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 89128 0.67 0.993047
Target:  5'- ------aGACGCgCGUuu--CGCCUGCg -3'
miRNA:   3'- uuuauaaCUGCG-GCAucuuGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 89870 0.66 0.997816
Target:  5'- gAGAUGUUGcCGCUGUGcagcgugguGGGCGCaaGCg -3'
miRNA:   3'- -UUUAUAACuGCGGCAU---------CUUGCGgaCG- -5'
21313 3' -48.4 NC_004778.3 + 90604 0.66 0.997383
Target:  5'- ------cGGCGCCGUAGcaaGCCagGCc -3'
miRNA:   3'- uuuauaaCUGCGGCAUCuugCGGa-CG- -5'
21313 3' -48.4 NC_004778.3 + 93413 0.66 0.998503
Target:  5'- ------cGACGCCgGUGGAAaagcuaauCGCCaGCa -3'
miRNA:   3'- uuuauaaCUGCGG-CAUCUU--------GCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 96526 0.71 0.940017
Target:  5'- ------gGGCGCaaaaugGGAGCGCCUGCc -3'
miRNA:   3'- uuuauaaCUGCGgca---UCUUGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.