Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21313 | 3' | -48.4 | NC_004778.3 | + | 70211 | 0.67 | 0.996304 |
Target: 5'- ---gGUUGGCGCCGguGGGCGCagGCc -3' miRNA: 3'- uuuaUAACUGCGGCauCUUGCGgaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 66758 | 0.69 | 0.985405 |
Target: 5'- ------cGGCGCCGaccucacuuuucgAGAACGUCUGUa -3' miRNA: 3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 66692 | 0.69 | 0.985405 |
Target: 5'- ------cGGCGCCGaccucgcuuuucgAGAACGUCUGUa -3' miRNA: 3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 66326 | 0.69 | 0.977525 |
Target: 5'- ------gGACGCCGUcguuAGAuuGCGUUUGCa -3' miRNA: 3'- uuuauaaCUGCGGCA----UCU--UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 63852 | 0.69 | 0.98613 |
Target: 5'- ---gAUUGcuuCGCCGgaacuGGACGCgCUGCa -3' miRNA: 3'- uuuaUAACu--GCGGCau---CUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 62020 | 0.66 | 0.996882 |
Target: 5'- aAGAUGUcugcgGACGCCG-AGAgcgGCGCCa-- -3' miRNA: 3'- -UUUAUAa----CUGCGGCaUCU---UGCGGacg -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 61788 | 0.66 | 0.997775 |
Target: 5'- ---cGUUGGCGCgCGcUGGcugcgcggcgccaAACGCUUGCa -3' miRNA: 3'- uuuaUAACUGCG-GC-AUC-------------UUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 60346 | 0.66 | 0.997816 |
Target: 5'- ---gGUUG-CGCgCGUAGAuuucgcGCGCCaGCu -3' miRNA: 3'- uuuaUAACuGCG-GCAUCU------UGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 57998 | 0.66 | 0.997383 |
Target: 5'- ---aGUUGACGCUGcgcaacGAGCGCaUGCc -3' miRNA: 3'- uuuaUAACUGCGGCau----CUUGCGgACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 56466 | 0.66 | 0.998474 |
Target: 5'- cAAGUGUUgagcucgGACGaaGUGGAgguuGCGCCUGa -3' miRNA: 3'- -UUUAUAA-------CUGCggCAUCU----UGCGGACg -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 49599 | 0.68 | 0.98782 |
Target: 5'- ------cGACagguaGCCGUGcGAGCGCaCUGCg -3' miRNA: 3'- uuuauaaCUG-----CGGCAU-CUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 48171 | 0.66 | 0.998503 |
Target: 5'- uGGUggUGGCGCgCGUAGAaacgaugucaAUGUCUGUu -3' miRNA: 3'- uUUAuaACUGCG-GCAUCU----------UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 47696 | 1.1 | 0.009786 |
Target: 5'- aAAAUAUUGACGCCGUAGAACGCCUGCu -3' miRNA: 3'- -UUUAUAACUGCGGCAUCUUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 47668 | 0.69 | 0.979972 |
Target: 5'- cGGUGUUGGCGCCG-GGAaaaAUGCCcaGCc -3' miRNA: 3'- uUUAUAACUGCGGCaUCU---UGCGGa-CG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 45728 | 0.66 | 0.997383 |
Target: 5'- ------aGGCGCUGgaGGAGCGCUacgUGCg -3' miRNA: 3'- uuuauaaCUGCGGCa-UCUUGCGG---ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 43273 | 0.74 | 0.859808 |
Target: 5'- ------cGGCGCCGUcGaAGCGCUUGCg -3' miRNA: 3'- uuuauaaCUGCGGCAuC-UUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 43137 | 0.67 | 0.994882 |
Target: 5'- ------cGGCGCCGcGGcGCGCC-GCa -3' miRNA: 3'- uuuauaaCUGCGGCaUCuUGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 34772 | 0.66 | 0.996882 |
Target: 5'- ------gGAUGCgGUcuuGCGCCUGCa -3' miRNA: 3'- uuuauaaCUGCGgCAucuUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 32299 | 0.67 | 0.996304 |
Target: 5'- ------aGugGCCGcggcgcauUGGAGCGCCgucgUGCa -3' miRNA: 3'- uuuauaaCugCGGC--------AUCUUGCGG----ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 30511 | 0.69 | 0.977525 |
Target: 5'- ---aAUUGAuCGCCGaaaaaucGAGCGCCUGg -3' miRNA: 3'- uuuaUAACU-GCGGCau-----CUUGCGGACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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