Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21313 | 3' | -48.4 | NC_004778.3 | + | 28917 | 0.67 | 0.996304 |
Target: 5'- ---aAUUGGCGCCGaAGcucucGGCGCUguuUGCg -3' miRNA: 3'- uuuaUAACUGCGGCaUC-----UUGCGG---ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 28172 | 0.71 | 0.944931 |
Target: 5'- ------cGcCGCCGUuGAGCGCCaUGCg -3' miRNA: 3'- uuuauaaCuGCGGCAuCUUGCGG-ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 28127 | 0.66 | 0.998503 |
Target: 5'- -cGUGUUcGCGCUGc-GAagcgcACGCCUGCa -3' miRNA: 3'- uuUAUAAcUGCGGCauCU-----UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 28036 | 0.66 | 0.997383 |
Target: 5'- ------cGGCGgCG-AGGACGCgCUGCu -3' miRNA: 3'- uuuauaaCUGCgGCaUCUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 21861 | 0.68 | 0.98782 |
Target: 5'- gAGGUAUaGACGCCGcgcauacggccAGAcaGCGUCUGCu -3' miRNA: 3'- -UUUAUAaCUGCGGCa----------UCU--UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 20208 | 0.71 | 0.940017 |
Target: 5'- uAGUcgUGGCGaCUGUGGccuccuuguGCGCCUGCc -3' miRNA: 3'- uUUAuaACUGC-GGCAUCu--------UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 18331 | 0.67 | 0.99564 |
Target: 5'- -cAUGUUGugGCUGUucacccuuuuAGGGCGCUUuGUg -3' miRNA: 3'- uuUAUAACugCGGCA----------UCUUGCGGA-CG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 8745 | 0.72 | 0.917605 |
Target: 5'- ------cGGCGCCGUGGcGCGCCa-- -3' miRNA: 3'- uuuauaaCUGCGGCAUCuUGCGGacg -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 8623 | 0.7 | 0.971679 |
Target: 5'- ----uUUGACGCCGUGGugguggaAGCGUCcGCc -3' miRNA: 3'- uuuauAACUGCGGCAUC-------UUGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 4041 | 0.72 | 0.922442 |
Target: 5'- uGAAUGUguuCGCCGgcgggcaggccGAGCGCCUGCc -3' miRNA: 3'- -UUUAUAacuGCGGCau---------CUUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 1851 | 0.66 | 0.996882 |
Target: 5'- ------cGAUGUCGggcauGCGCCUGCu -3' miRNA: 3'- uuuauaaCUGCGGCaucu-UGCGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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