miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 47696 1.1 0.009786
Target:  5'- aAAAUAUUGACGCCGUAGAACGCCUGCu -3'
miRNA:   3'- -UUUAUAACUGCGGCAUCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 129145 0.77 0.69311
Target:  5'- -----cUGACGCCGUGGAAUuGCCgGCc -3'
miRNA:   3'- uuuauaACUGCGGCAUCUUG-CGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 43273 0.74 0.859808
Target:  5'- ------cGGCGCCGUcGaAGCGCUUGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAuC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 8745 0.72 0.917605
Target:  5'- ------cGGCGCCGUGGcGCGCCa-- -3'
miRNA:   3'- uuuauaaCUGCGGCAUCuUGCGGacg -5'
21313 3' -48.4 NC_004778.3 + 4041 0.72 0.922442
Target:  5'- uGAAUGUguuCGCCGgcgggcaggccGAGCGCCUGCc -3'
miRNA:   3'- -UUUAUAacuGCGGCau---------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 121767 0.72 0.923623
Target:  5'- ------cGACGgCGUGGAccGCGCgCUGCa -3'
miRNA:   3'- uuuauaaCUGCgGCAUCU--UGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 20208 0.71 0.940017
Target:  5'- uAGUcgUGGCGaCUGUGGccuccuuguGCGCCUGCc -3'
miRNA:   3'- uUUAuaACUGC-GGCAUCu--------UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 96526 0.71 0.940017
Target:  5'- ------gGGCGCaaaaugGGAGCGCCUGCc -3'
miRNA:   3'- uuuauaaCUGCGgca---UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 28172 0.71 0.944931
Target:  5'- ------cGcCGCCGUuGAGCGCCaUGCg -3'
miRNA:   3'- uuuauaaCuGCGGCAuCUUGCGG-ACG- -5'
21313 3' -48.4 NC_004778.3 + 124462 0.7 0.965512
Target:  5'- ------aGACGCCGUGcccACGCCgGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAUcu-UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 121302 0.7 0.968865
Target:  5'- ---aGUUGAaccCGCUGcAGAugGCUUGCa -3'
miRNA:   3'- uuuaUAACU---GCGGCaUCUugCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 8623 0.7 0.971679
Target:  5'- ----uUUGACGCCGUGGugguggaAGCGUCcGCc -3'
miRNA:   3'- uuuauAACUGCGGCAUC-------UUGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 30511 0.69 0.977525
Target:  5'- ---aAUUGAuCGCCGaaaaaucGAGCGCCUGg -3'
miRNA:   3'- uuuaUAACU-GCGGCau-----CUUGCGGACg -5'
21313 3' -48.4 NC_004778.3 + 66326 0.69 0.977525
Target:  5'- ------gGACGCCGUcguuAGAuuGCGUUUGCa -3'
miRNA:   3'- uuuauaaCUGCGGCA----UCU--UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 81718 0.69 0.977525
Target:  5'- -----aUGAcCGCUuaGUAGcGGCGCCUGCg -3'
miRNA:   3'- uuuauaACU-GCGG--CAUC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 86477 0.69 0.979972
Target:  5'- ---aGUUG-UGUCGUAcuggagcgcguuGAACGCCUGCu -3'
miRNA:   3'- uuuaUAACuGCGGCAU------------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 105142 0.69 0.979972
Target:  5'- aGAAUug-GGCGCCGcGGcGCGCUUGUu -3'
miRNA:   3'- -UUUAuaaCUGCGGCaUCuUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 47668 0.69 0.979972
Target:  5'- cGGUGUUGGCGCCG-GGAaaaAUGCCcaGCc -3'
miRNA:   3'- uUUAUAACUGCGGCaUCU---UGCGGa-CG- -5'
21313 3' -48.4 NC_004778.3 + 110337 0.69 0.984265
Target:  5'- -----gUGGCGCCGUcugcGAaaGCGCgUGCg -3'
miRNA:   3'- uuuauaACUGCGGCAu---CU--UGCGgACG- -5'
21313 3' -48.4 NC_004778.3 + 66692 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucgcuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.