miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 5' -53.3 NC_004778.3 + 33210 0.66 0.959821
Target:  5'- cGCGCucGGCCg---GGCGCAaguC-CGCa -3'
miRNA:   3'- -CGCGu-UCGGaacaCCGCGUau-GuGCG- -5'
21313 5' -53.3 NC_004778.3 + 47958 0.66 0.959821
Target:  5'- aGCGCc-GCUUUGUucgaaagcacGCGCcaGUACGCGCg -3'
miRNA:   3'- -CGCGuuCGGAACAc---------CGCG--UAUGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 28913 0.66 0.959821
Target:  5'- gGCGCcgAAGCUcuc-GGCGCuguuUGCGCGUg -3'
miRNA:   3'- -CGCG--UUCGGaacaCCGCGu---AUGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 73619 0.66 0.959074
Target:  5'- cGCGCAuGUCgcgcucggacaGUGGCGCcgcGUugGCGUc -3'
miRNA:   3'- -CGCGUuCGGaa---------CACCGCG---UAugUGCG- -5'
21313 5' -53.3 NC_004778.3 + 83740 0.66 0.955989
Target:  5'- cGCGguGGCCcccGUGGaCGCGUuauuGCAuUGCu -3'
miRNA:   3'- -CGCguUCGGaa-CACC-GCGUA----UGU-GCG- -5'
21313 5' -53.3 NC_004778.3 + 112385 0.66 0.955989
Target:  5'- cCGCAAGCgCgcgGUcGCGCAgcuuaggcgGCACGUa -3'
miRNA:   3'- cGCGUUCG-Gaa-CAcCGCGUa--------UGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 31543 0.66 0.955989
Target:  5'- uCGUAagcGGCCUUGUgcGGCGCcaGCACu- -3'
miRNA:   3'- cGCGU---UCGGAACA--CCGCGuaUGUGcg -5'
21313 5' -53.3 NC_004778.3 + 38060 0.66 0.953573
Target:  5'- aCGCAAacaccugagucaaauGCCgcUGcGGCGCG-ACGCGCa -3'
miRNA:   3'- cGCGUU---------------CGGa-ACaCCGCGUaUGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 10747 0.66 0.951914
Target:  5'- cCGCGGGCUgccgUGUGcGCGCcgccGUAaACGCc -3'
miRNA:   3'- cGCGUUCGGa---ACAC-CGCG----UAUgUGCG- -5'
21313 5' -53.3 NC_004778.3 + 93020 0.66 0.951914
Target:  5'- cGC-CGAGCCguucucGGCcgaaGCGUGCACGUg -3'
miRNA:   3'- -CGcGUUCGGaaca--CCG----CGUAUGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 37831 0.66 0.951914
Target:  5'- aGCGCGcGGCgacacgcGUGGUGCuuaucgACGCGCa -3'
miRNA:   3'- -CGCGU-UCGgaa----CACCGCGua----UGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 25709 0.66 0.951493
Target:  5'- cGCGCAcgaggcaaugcacAGCgCUUGUGuuGCGUuugccGUAUugGCg -3'
miRNA:   3'- -CGCGU-------------UCG-GAACAC--CGCG-----UAUGugCG- -5'
21313 5' -53.3 NC_004778.3 + 85474 0.66 0.951493
Target:  5'- aCGCGGGCgUUUGcGGCggcgacgGCAUGgACGCg -3'
miRNA:   3'- cGCGUUCG-GAACaCCG-------CGUAUgUGCG- -5'
21313 5' -53.3 NC_004778.3 + 95936 0.66 0.947595
Target:  5'- gGCGCAgcgcGGCC----GGCGCGcUGcCGCGCg -3'
miRNA:   3'- -CGCGU----UCGGaacaCCGCGU-AU-GUGCG- -5'
21313 5' -53.3 NC_004778.3 + 70309 0.66 0.947595
Target:  5'- cGCGCugucGAGCaaUGUGGUGUAggguaaGCACGg -3'
miRNA:   3'- -CGCG----UUCGgaACACCGCGUa-----UGUGCg -5'
21313 5' -53.3 NC_004778.3 + 25326 0.66 0.943494
Target:  5'- gGCGCAA-CCUUGUcugcgccgcaagaacGUGCAgguuUGCACGCg -3'
miRNA:   3'- -CGCGUUcGGAACAc--------------CGCGU----AUGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 116797 0.66 0.943026
Target:  5'- uGCGC-AGUUUg--GGCGCGUaaaACGCGUu -3'
miRNA:   3'- -CGCGuUCGGAacaCCGCGUA---UGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 57009 0.66 0.942555
Target:  5'- -gGCGAGUuugccgccuacacUUUGUGGCGCA-GCcCGCu -3'
miRNA:   3'- cgCGUUCG-------------GAACACCGCGUaUGuGCG- -5'
21313 5' -53.3 NC_004778.3 + 87930 0.66 0.938206
Target:  5'- uGCGCAacAGCCacuguuuacgUUGUaGCGCugcucACACGCc -3'
miRNA:   3'- -CGCGU--UCGG----------AACAcCGCGua---UGUGCG- -5'
21313 5' -53.3 NC_004778.3 + 9697 0.66 0.938206
Target:  5'- gGCGCGGcGUCgUGUuccaaaacGGCGCGcaaaucgucgaUACGCGCg -3'
miRNA:   3'- -CGCGUU-CGGaACA--------CCGCGU-----------AUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.