Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21313 | 5' | -53.3 | NC_004778.3 | + | 28913 | 0.66 | 0.959821 |
Target: 5'- gGCGCcgAAGCUcuc-GGCGCuguuUGCGCGUg -3' miRNA: 3'- -CGCG--UUCGGaacaCCGCGu---AUGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 33210 | 0.66 | 0.959821 |
Target: 5'- cGCGCucGGCCg---GGCGCAaguC-CGCa -3' miRNA: 3'- -CGCGu-UCGGaacaCCGCGUau-GuGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 47958 | 0.66 | 0.959821 |
Target: 5'- aGCGCc-GCUUUGUucgaaagcacGCGCcaGUACGCGCg -3' miRNA: 3'- -CGCGuuCGGAACAc---------CGCG--UAUGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 73619 | 0.66 | 0.959074 |
Target: 5'- cGCGCAuGUCgcgcucggacaGUGGCGCcgcGUugGCGUc -3' miRNA: 3'- -CGCGUuCGGaa---------CACCGCG---UAugUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 31543 | 0.66 | 0.955989 |
Target: 5'- uCGUAagcGGCCUUGUgcGGCGCcaGCACu- -3' miRNA: 3'- cGCGU---UCGGAACA--CCGCGuaUGUGcg -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 83740 | 0.66 | 0.955989 |
Target: 5'- cGCGguGGCCcccGUGGaCGCGUuauuGCAuUGCu -3' miRNA: 3'- -CGCguUCGGaa-CACC-GCGUA----UGU-GCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 112385 | 0.66 | 0.955989 |
Target: 5'- cCGCAAGCgCgcgGUcGCGCAgcuuaggcgGCACGUa -3' miRNA: 3'- cGCGUUCG-Gaa-CAcCGCGUa--------UGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 38060 | 0.66 | 0.953573 |
Target: 5'- aCGCAAacaccugagucaaauGCCgcUGcGGCGCG-ACGCGCa -3' miRNA: 3'- cGCGUU---------------CGGa-ACaCCGCGUaUGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 93020 | 0.66 | 0.951914 |
Target: 5'- cGC-CGAGCCguucucGGCcgaaGCGUGCACGUg -3' miRNA: 3'- -CGcGUUCGGaaca--CCG----CGUAUGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 37831 | 0.66 | 0.951914 |
Target: 5'- aGCGCGcGGCgacacgcGUGGUGCuuaucgACGCGCa -3' miRNA: 3'- -CGCGU-UCGgaa----CACCGCGua----UGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 10747 | 0.66 | 0.951914 |
Target: 5'- cCGCGGGCUgccgUGUGcGCGCcgccGUAaACGCc -3' miRNA: 3'- cGCGUUCGGa---ACAC-CGCG----UAUgUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 25709 | 0.66 | 0.951493 |
Target: 5'- cGCGCAcgaggcaaugcacAGCgCUUGUGuuGCGUuugccGUAUugGCg -3' miRNA: 3'- -CGCGU-------------UCG-GAACAC--CGCG-----UAUGugCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 85474 | 0.66 | 0.951493 |
Target: 5'- aCGCGGGCgUUUGcGGCggcgacgGCAUGgACGCg -3' miRNA: 3'- cGCGUUCG-GAACaCCG-------CGUAUgUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 95936 | 0.66 | 0.947595 |
Target: 5'- gGCGCAgcgcGGCC----GGCGCGcUGcCGCGCg -3' miRNA: 3'- -CGCGU----UCGGaacaCCGCGU-AU-GUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 70309 | 0.66 | 0.947595 |
Target: 5'- cGCGCugucGAGCaaUGUGGUGUAggguaaGCACGg -3' miRNA: 3'- -CGCG----UUCGgaACACCGCGUa-----UGUGCg -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 25326 | 0.66 | 0.943494 |
Target: 5'- gGCGCAA-CCUUGUcugcgccgcaagaacGUGCAgguuUGCACGCg -3' miRNA: 3'- -CGCGUUcGGAACAc--------------CGCGU----AUGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 116797 | 0.66 | 0.943026 |
Target: 5'- uGCGC-AGUUUg--GGCGCGUaaaACGCGUu -3' miRNA: 3'- -CGCGuUCGGAacaCCGCGUA---UGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 57009 | 0.66 | 0.942555 |
Target: 5'- -gGCGAGUuugccgccuacacUUUGUGGCGCA-GCcCGCu -3' miRNA: 3'- cgCGUUCG-------------GAACACCGCGUaUGuGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 87930 | 0.66 | 0.938206 |
Target: 5'- uGCGCAacAGCCacuguuuacgUUGUaGCGCugcucACACGCc -3' miRNA: 3'- -CGCGU--UCGG----------AACAcCGCGua---UGUGCG- -5' |
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21313 | 5' | -53.3 | NC_004778.3 | + | 9697 | 0.66 | 0.938206 |
Target: 5'- gGCGCGGcGUCgUGUuccaaaacGGCGCGcaaaucgucgaUACGCGCg -3' miRNA: 3'- -CGCGUU-CGGaACA--------CCGCGU-----------AUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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