miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21314 5' -52.3 NC_004778.3 + 30904 0.66 0.973719
Target:  5'- uCGCAA-GAAGUGCcGGUGcugguuUGCGGCc -3'
miRNA:   3'- cGUGUUgUUUCACGuCCAC------ACGCCGc -5'
21314 5' -52.3 NC_004778.3 + 101622 0.66 0.970839
Target:  5'- aGCGCAACGAccaugucagcGUGCAGGUuucuuggaacGUGUGGa- -3'
miRNA:   3'- -CGUGUUGUUu---------CACGUCCA----------CACGCCgc -5'
21314 5' -52.3 NC_004778.3 + 115977 0.66 0.96774
Target:  5'- aCACAACAAAucaCGGGUGUGUGuuaGCGg -3'
miRNA:   3'- cGUGUUGUUUcacGUCCACACGC---CGC- -5'
21314 5' -52.3 NC_004778.3 + 127934 0.66 0.96774
Target:  5'- -gACGugGAGaUGgGGGUGUucaGCGGCGa -3'
miRNA:   3'- cgUGUugUUUcACgUCCACA---CGCCGC- -5'
21314 5' -52.3 NC_004778.3 + 102036 0.66 0.965772
Target:  5'- gGCGCcgccuaAACAAAGUGaCcaguguaaagaaucaAGGcaUGUGCGGCGc -3'
miRNA:   3'- -CGUG------UUGUUUCAC-G---------------UCC--ACACGCCGC- -5'
21314 5' -52.3 NC_004778.3 + 25076 0.67 0.958607
Target:  5'- cGCGCAGCuucuaucgcauauuuGGGGUGCgcGGGUG-GCGGa- -3'
miRNA:   3'- -CGUGUUG---------------UUUCACG--UCCACaCGCCgc -5'
21314 5' -52.3 NC_004778.3 + 57168 0.67 0.953018
Target:  5'- uGCGCcACAAAGUGUAG----GCGGCa -3'
miRNA:   3'- -CGUGuUGUUUCACGUCcacaCGCCGc -5'
21314 5' -52.3 NC_004778.3 + 65758 0.67 0.93939
Target:  5'- gGCGCAGCGAGc--CGGGcgGUGaCGGCGa -3'
miRNA:   3'- -CGUGUUGUUUcacGUCCa-CAC-GCCGC- -5'
21314 5' -52.3 NC_004778.3 + 118568 0.67 0.937901
Target:  5'- gGCACAGCAAAuuuaaaacacccacGUccuGguGGcggGUGCGGCa -3'
miRNA:   3'- -CGUGUUGUUU--------------CA---CguCCa--CACGCCGc -5'
21314 5' -52.3 NC_004778.3 + 41242 0.68 0.934336
Target:  5'- uGCACAaauGCGucGUGguGGUGUugGGCa -3'
miRNA:   3'- -CGUGU---UGUuuCACguCCACAcgCCGc -5'
21314 5' -52.3 NC_004778.3 + 26888 0.68 0.923451
Target:  5'- cGCGCuGCAGGccGCGGcGUuUGCGGCGg -3'
miRNA:   3'- -CGUGuUGUUUcaCGUC-CAcACGCCGC- -5'
21314 5' -52.3 NC_004778.3 + 34179 0.68 0.917619
Target:  5'- uGCGCAGCA---UGCAGGacgUGcUGUGGCu -3'
miRNA:   3'- -CGUGUUGUuucACGUCC---AC-ACGCCGc -5'
21314 5' -52.3 NC_004778.3 + 49306 0.69 0.898579
Target:  5'- aGCGCGGCGcGGUcauuggacGCGGcgccgcacaacGUGUGCGGCa -3'
miRNA:   3'- -CGUGUUGUuUCA--------CGUC-----------CACACGCCGc -5'
21314 5' -52.3 NC_004778.3 + 33173 0.69 0.884626
Target:  5'- aCGCGGCAAgGGUGCuGGaacGCGGCGa -3'
miRNA:   3'- cGUGUUGUU-UCACGuCCacaCGCCGC- -5'
21314 5' -52.3 NC_004778.3 + 116313 0.7 0.861891
Target:  5'- cGCGucGCGuuG-GCGGG-GUGCGGCGg -3'
miRNA:   3'- -CGUguUGUuuCaCGUCCaCACGCCGC- -5'
21314 5' -52.3 NC_004778.3 + 80916 0.7 0.853854
Target:  5'- -gACGACAu-GUGCAGc-GUGCGGCa -3'
miRNA:   3'- cgUGUUGUuuCACGUCcaCACGCCGc -5'
21314 5' -52.3 NC_004778.3 + 93752 0.7 0.837134
Target:  5'- cGCACAGCAuGGGUGUuuGGUGgcuuuugGCGGgGu -3'
miRNA:   3'- -CGUGUUGU-UUCACGu-CCACa------CGCCgC- -5'
21314 5' -52.3 NC_004778.3 + 75314 0.7 0.828466
Target:  5'- uGCGCAACAAGGUcacuGUcGGUGaaggccaaaGCGGCGg -3'
miRNA:   3'- -CGUGUUGUUUCA----CGuCCACa--------CGCCGC- -5'
21314 5' -52.3 NC_004778.3 + 25947 0.71 0.810558
Target:  5'- aGCGCGGCGGg--GCAGcGUG-GCGGCa -3'
miRNA:   3'- -CGUGUUGUUucaCGUC-CACaCGCCGc -5'
21314 5' -52.3 NC_004778.3 + 47862 0.71 0.801336
Target:  5'- uGCAUuaauuaagGACGAGGaaauGGUGUGCGGCGa -3'
miRNA:   3'- -CGUG--------UUGUUUCacguCCACACGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.